Evidence map›Paper›PMID 22863779›Full record

ArticleThe EMBO journal2012

CSR-1 RNAi pathway positively regulates histone expression in C. elegans.

Daphne C Avgousti, Santhosh Palani, Yekaterina Sherman, Alla Grishok

Abstract read
In one paragraph

Article in The EMBO journal, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed.

  1. SLBP-independent control of maternal histone mRNA.bioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Small RNAs and chromatin in the multigenerational epigenetic landscape ofPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021
    Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Daphne C AvgoustiDepartment of Biochemistry and Molecular Biophysics, Columbia University Medical Center, New York, NY, USA.
Santhosh Palani
Yekaterina Sherman
Alla Grishok

Funding

Hormones: Molecular Mechanism of Action and FunctionsT32DK007328 · NIDDK · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI KOUSTENI, STAVROULA · 1986 to 2025
$7.8M
Investigating the Potential of Endogenous RNAi in Mediating Adaptation to EnvironDP2OD006412 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GRISHOK, ALLA · 2009 to 2009
$2.4M
NIDDK NIH HHS DK07328NIDDK NIH HHS T32 DK007328NIH HHS 1DP2OD006412-01NIH HHS DP2 OD006412
6 · The paper itself

Abstract

Endogenous small interfering RNAs (endo-siRNAs) have been discovered in many organisms, including mammals. In C. elegans, depletion of germline-enriched endo-siRNAs found in complex with the CSR-1 Argonaute protein causes sterility and defects in chromosome segregation in early embryos. We discovered that knockdown of either csr-1, the RNA-dependent RNA polymerase (RdRP) ego-1, or the dicer-related helicase drh-3, leads to defects in histone mRNA processing, resulting in severe depletion of core histone proteins. The maturation of replication-dependent histone mRNAs, unlike that of other mRNAs, requires processing of their 3'UTRs through an endonucleolytic cleavage guided by the U7 snRNA, which is lacking in C. elegans. We found that CSR-1-bound antisense endo-siRNAs match histone mRNAs and mRNA precursors. Consistently, we demonstrate that CSR-1 directly binds to histone mRNA in an ego-1-dependent manner using biotinylated 2'-O-methyl RNA oligonucleotides. Moreover, we demonstrate that increasing the dosage of histone genes rescues the lethality associated with depletion of CSR-1 and EGO-1. These results support a positive and direct effect of RNAi on histone gene expression.

Indexed as

AnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsDEAD-box RNA HelicasesGene DosageGene SilencingHistonesProtein BindingRNA-Dependent RNA PolymeraseRNA InterferenceRNA, MessengerCaenorhabditis elegans ProteinsCSR-1 protein, C elegansDEAD-box RNA HelicasesDrh-3 protein, C elegansEGO-1 protein, C elegansHistonesRNA-Dependent RNA PolymeraseRNA, Messenger

Identifiers

PMID22863779
PMCPMC3463841

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.