Evidence map›Paper›PMID 22863007›Full record

ArticleCell2012

Exome capture reveals ZNF423 and CEP164 mutations, linking renal ciliopathies to DNA damage response signaling.

Moumita Chaki, Rannar Airik, Amiya K Ghosh, Rachel H Giles, Rui Chen, Gisela G Slaats, Hui Wang, Toby W Hurd, Weibin Zhou, Andrew Cluckey and 63 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 252 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
252citing papers in PubMed, 1 pooled it
26.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

252 citing papers in PubMed, 1 synthesis or guideline pooled it, 391 citations in OpenAlex.

  1. Pooled it
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  11. bioRxiv : the preprint server for biology · 2025
    Article
  12. Cholangiocytes' primary cilia regulate DNA damage response and repair.American journal of physiology. Gastrointestinal and liver physiology · 2025
    Article
  13. Article
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  15. Review
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192 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

73 authors at 20 institutions in 10 countries.

Moumita ChakiDepartment of Pediatrics and Communicable Diseases, University of Michigan, Ann Arbor, MI 48109, USA.
Rannar Airik
Amiya K Ghosh
Rachel H Giles
Rui Chen
Gisela G Slaats
Hui Wang
Toby W Hurd
Weibin Zhou
Andrew Cluckey
Heon Yung Gee
Gokul Ramaswami
Chen-Jei Hong
Bruce A Hamilton
Igor Cervenka
Ranjani Sri Ganji
Vitezslav Bryja
Heleen H Arts
Jeroen van Reeuwijk
Machteld M Oud
Stef J F Letteboer
Ronald Roepman
Hervé Husson
Oxana Ibraghimov-Beskrovnaya
Takayuki Yasunaga
Gerd Walz
Lorraine Eley
John A Sayer
Bernhard Schermer
Max C Liebau
Thomas Benzing
Stephanie Le Corre
Iain Drummond
Sabine Janssen
Susan J Allen
Sivakumar Natarajan
John F O'Toole
Massimo Attanasio
Sophie Saunier
Corinne Antignac
Robert K Koenekoop
Huanan Ren
Irma Lopez
Ahmet Nayir
Corinne Stoetzel
Helene Dollfus
Rustin Massoudi
Joseph G Gleeson
Sharon P Andreoli
Dan G Doherty
Anna Lindstrad
Christelle Golzio
Nicholas Katsanis
Lars Pape
Emad B Abboud
Ali A Al-Rajhi
Richard A Lewis
Heymut Omran
Eva Y-H P Lee
Shaohui Wang
Joann M Sekiguchi
Rudel Saunders
Colin A Johnson
Elizabeth Garner
Katja Vanselow
Jens S Andersen
Joseph Shlomai
Gudrun Nurnberg
Peter Nurnberg
Shawn Levy
Agata Smogorzewska
Edgar A Otto
Friedhelm Hildebrandt
University of Michigan–Ann Arbor · USRadboud University Medical Center · NLBaylor College of Medicine · USMontreal Children's Hospital · CAUniversity of Cologne · DECologne Excellence Cluster on Cellular Stress Responses in Aging Associated Diseases · DEInserm · FRKing Khaled Eye Specialist Hospital · SAMasaryk University · CZNewcastle University · GBRockefeller University · USUniversity Medical Center Freiburg · DEUniversity Medical Center Utrecht · NLUniversity of California, Irvine · USUniversity of California, San Diego · USUniversity of Southern Denmark · DKCase Western Reserve University · USCzech Academy of Sciences, Institute of Biophysics · CZDuke Medical Center · USDuke University · US

Funding

The Human Genome Sequencing CenterU54HG003273 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A · 2004 to 2015
$341.3M
PUBLIC HEALTH DEMONSTRATIONP60DK020572 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MYERS, MARTIN G · 1985 to 2012
$26.5M
Regional Pilot And Feasibility Study Grants ProgramP30DK020572 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Martin G Myers · 2013 to 2026
$24.3M
Molecular Genetics of BBSR01HD042601 · NICHD · LURIE CHILDREN'S HOSPITAL OF CHICAGO · PI DAVIS, ERICA ELLEN · 2003 to 2023
$8.2M
GENETICS OF EARLY ONSET RETINAL DISEASESR01EY018571 · NEI · UNIVERSITY OF CALIFORNIA-IRVINE · PI RUI CHEN · 2008 to 2026
$7.2M
Genetic and Functional Studies of Human Ciliary SyndromesR01DK072301 · NIDDK · LURIE CHILDREN'S HOSPITAL OF CHICAGO · PI DAVIS, ERICA ELLEN · 2005 to 2022
$7.2M
Novel genetics, pathobiology & therapy of nephronophthisis-related ciliopathiesR01DK068306 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HILDEBRANDT, FRIEDHELM · 2004 to 2022
$6.6M
Identification and function of new genes causing childhood nephrotic syndromeR01DK076683 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HILDEBRANDT, FRIEDHELM · 2007 to 2021
$5.3M
New genes and pathomechanisms of congenital abnormalities of the kidney (CAKUT)R01DK088767 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HILDEBRANDT, FRIEDHELM · 2010 to 2019
$3.4M
The Role of Basa Bodies in Wnt SignalingR01DK075972 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI KATSANIS, NICHOLAS · 2007 to 2015
$3.1M
Genetic Analysis of Neural Stem CellsR01NS060109 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAMILTON, BRUCE A · 2008 to 2012
$1.7M
Genetic Mechanisms in Cerebellum MalformationsR01NS054871 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAMILTON, BRUCE A · 2007 to 2011
$1.6M
Howard Hughes Medical InstituteMedical Research Council G0700073NCRR NIH HHS S10 RR026550NEI NIH HHS F32 EY019430NEI NIH HHS F32EY19430NEI NIH HHS R01 EY018571NEI NIH HHS R01EY018571NHGRI NIH HHS U54 HG003273NHLBI NIH HHS R01 HL095545NICHD NIH HHS HD042601NICHD NIH HHS R01 HD042601NIDDK NIH HHS DK068306NIDDK NIH HHS DK072301NIDDK NIH HHS DK075972NIDDK NIH HHS DK090917NIDDK NIH HHS DK091405NIDDK NIH HHS K99 DK091405NIDDK NIH HHS P30 DK020572NIDDK NIH HHS P60 DK020572NIDDK NIH HHS R01 DK068306NIDDK NIH HHS R01 DK072301NIDDK NIH HHS R01 DK075972NIDDK NIH HHS R01 DK076683NIDDK NIH HHS R01 DK088767NIDDK NIH HHS RC4 DK090917NINDS NIH HHS NS054871NINDS NIH HHS NS060109NINDS NIH HHS R01 NS054871NINDS NIH HHS R01 NS060109
6 · The paper itself

Abstract

Nephronophthisis-related ciliopathies (NPHP-RC) are degenerative recessive diseases that affect kidney, retina, and brain. Genetic defects in NPHP gene products that localize to cilia and centrosomes defined them as "ciliopathies." However, disease mechanisms remain poorly understood. Here, we identify by whole-exome resequencing, mutations of MRE11, ZNF423, and CEP164 as causing NPHP-RC. All three genes function within the DNA damage response (DDR) pathway. We demonstrate that, upon induced DNA damage, the NPHP-RC proteins ZNF423, CEP164, and NPHP10 colocalize to nuclear foci positive for TIP60, known to activate ATM at sites of DNA damage. We show that knockdown of CEP164 or ZNF423 causes sensitivity to DNA damaging agents and that cep164 knockdown in zebrafish results in dysregulated DDR and an NPHP-RC phenotype. Our findings link degenerative diseases of the kidney and retina, disorders of increasing prevalence, to mechanisms of DDR.

Indexed as

DNA DamageExomeAnimalsCiliaDNA-Binding ProteinsGene Knockdown TechniquesGenes, RecessiveHumansKidney Diseases, CysticMiceMicrotubule ProteinsMRE11 Homologue ProteinProteinsSignal TransductionZebrafishCEP164 protein, humanDNA-Binding ProteinsMicrotubule ProteinsMRE11 Homologue ProteinMRE11 protein, humanornithine decarboxylase antizymeProteins

Identifiers

PMID22863007
PMCPMC3433835
OpenAlexW2138779444

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.