Evidence map›Paper›PMID 22858140›Full record

ArticleBioorganic & medicinal chemistry letters2012

In vitro evolution of an HIV integrase binding protein from a library of C-terminal domain γS-crystallin variants.

Issa S Moody, Shawn C Verde, Cathie M Overstreet, W Edward Robinson, Gregory A Weiss

Open access · greenAbstract read
In one paragraph

Article in Bioorganic & medicinal chemistry letters, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 84% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Development of a multipurpose scaffold for the display of peptide loops.Protein engineering, design & selection : PEDS · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Issa S MoodyDepartment of Molecular Biology & Biochemistry, University of California Irvine, Irvine, CA 92697-3900, USA.
Shawn C Verde
Cathie M Overstreet
W Edward Robinson
Gregory A Weiss
University of California, Irvine · US

Funding

MINORITY BIOMEDICAL RESEARCHERS PROGRAMR25GM055246 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI MOTA-BRAVO, LUIS M · 1996 to 2022
$15.3M
CARCINOGENESIST32CA009054 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI EDINGER, AIMEE L, FRUMAN, DAVID ALEXANDER · 1985 to 2025
$8.6M
UCI International Research TrainingT37MD001485 · NIMHD · UNIVERSITY OF CALIFORNIA-IRVINE · PI MOTA-BRAVO, LUIS M · 2005 to 2018
$3.5M
Engineering Soluble Aggregation-Prone and Membrane-Bound ProteinsR01GM078528 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI WEISS, GREGORY A. · 2006 to 2010
$1.3M
NCI NIH HHS 5 T32 CA09054NCI NIH HHS T32 CA009054NIGMS NIH HHS GM-55246NIGMS NIH HHS R01 GM078528NIGMS NIH HHS R25 GM055246NIMHD NIH HHS MD-01485NIMHD NIH HHS T37 MD001485
6 · The paper itself

Abstract

A protein without natural binding functions was engineered to bind HIV-1 integrase. Phage display selections applied a library of variants based on the C-terminal domain of the eye lens protein human γS-crystallin. Multiple loop regions were altered to encode libraries with ≈3.6 × 10(11) different variants. A crystallin variant, termed integrase binding protein-10 (IBP-10), inhibits integrase catalysis with nanomolar K(i) values. IBP-10 interacts with the integrase C-terminal domain and inhibits integrase substrate affinity. This allosteric mechanism allows IBP-10 to inhibit drug-resistant integrase variants. The results demonstrate the applicability of the crystallin scaffold for the discovery of binding partners and enzyme inhibitors.

Indexed as

Amino Acid Sequencegamma-CrystallinsHIV-1HIV InfectionsHIV IntegraseHIV Integrase InhibitorsHumansModels, MolecularPeptide LibraryProtein BindingProtein EngineeringProtein Structure, Tertiarygamma-CrystallinsHIV IntegraseHIV Integrase Inhibitorsp31 integrase protein, Human immunodeficiency virus 1Peptide Library

Identifiers

PMID22858140
PMCPMC3956296
OpenAlexW2133907494

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.