Evidence map›Paper›PMID 22855791›Full record

ArticleGenes & development2012

Identification of a DNA methylation-independent imprinting control region at the Arabidopsis MEDEA locus.

Heike J P Wöhrmann, Valeria Gagliardini, Michael T Raissig, Wendelin Wehrle, Julia Arand, Anja Schmidt, Sascha Tierling, Damian R Page, Hanspeter Schöb, Jörn Walter and 1 more

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 40 citations in OpenAlex.

  1. Allelic expression ofFrontiers in plant science · 2023
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  11. Transcriptional silencing by polycomb-group proteins.Cold Spring Harbor perspectives in biology · 2014
    Review
  12. Epigenetic memory in plants.The EMBO journal · 2014
    Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Reprogramming the epigenome in Arabidopsis pollen.Cold Spring Harbor symposia on quantitative biology · 2012
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 3 countries.

Heike J P WöhrmannInstitute of Plant Biology and Zürich-Basel Plant Science Center, University of Zürich, Zürich, Switzerland.
Valeria Gagliardini
Michael T Raissig
Wendelin Wehrle
Julia Arand
Anja Schmidt
Sascha Tierling
Damian R Page
Hanspeter Schöb
Jörn Walter
Ueli Grossniklaus
Institute of Plant Biology · HUSaarland University · DEUniversity of Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genomic imprinting is exclusive to mammals and seed plants and refers to parent-of-origin-dependent, differential transcription. As previously shown in mammals, studies in Arabidopsis have implicated DNA methylation as an important hallmark of imprinting. The current model suggests that maternally expressed imprinted genes, such as MEDEA (MEA), are activated by the DNA glycosylase DEMETER (DME), which removes DNA methylation established by the DNA methyltransferase MET1. We report the systematic functional dissection of the MEA cis-regulatory region, resulting in the identification of a 200-bp fragment that is necessary and sufficient to mediate MEA activation and imprinted expression, thus containing the imprinting control region (ICR). Notably, imprinted MEA expression mediated by this ICR is independent of DME and MET1, consistent with the lack of any significant DNA methylation in this region. This is the first example of an ICR without differential DNA methylation, suggesting that factors other than DME and MET1 are required for imprinting at the MEA locus.

Indexed as

ArabidopsisDNA MethylationGenomic ImprintingArabidopsis ProteinsGene Expression Regulation, PlantGene SilencingPromoter Regions, GeneticSeedsTransgenesArabidopsis ProteinsMEA protein, Arabidopsis

Identifiers

PMID22855791
PMCPMC3426762
OpenAlexW2160059106

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.