Evidence map›Paper›PMID 22855405›Full record

ArticleProteins2012

The mechanism of the converter domain rotation in the recovery stroke of myosin motor protein.

Andrij Baumketner

Abstract read
In one paragraph

Article in Proteins, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. An intermediate along the recovery stroke of myosin VI revealed by X-ray crystallography and molecular dynamics.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  6. Article
  7. Review
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author.

Andrij BaumketnerDepartment of Physics and Optical Science, University of North Carolina Charlotte, Charlotte, NC 28262, USA. abaumket@uncc.edu

Funding

Fast and Accurate Numerical Methods of Electrostatic Interactions in BiomoleculesR01GM083600 · NIGMS · UNIVERSITY OF NORTH CAROLINA CHARLOTTE · PI CAI, WEI · 2007 to 2010
$1.4M
High Performance Computing in Computational BiologyS10RR026514 · NCRR · UNIVERSITY OF NORTH CAROLINA CHARLOTTE · PI LIVESAY, DENNIS R · 2010 to 2010
$474k
NCRR NIH HHS 1S10RR026514-01NCRR NIH HHS S10 RR026514NIGMS NIH HHS R01 GM083600NIGMS NIH HHS R01GM083600-04
6 · The paper itself

Abstract

Upon ATP binding, myosin motor protein is found in two alternative conformations, prerecovery state M* and postrecovery state M**. The transition from one state to the other, known as the recovery stroke, plays a key role in the myosin functional cycle. Despite much recent research, the microscopic details of this transition remain elusive. A critical step in the recovery stroke is the rotation of the converter domain from "up" position in prerecovery state to "down" position in postrecovery state that leads to the swing of the lever arm attached to it. In this work, we demonstrate that the two rotational states of the converter domain are determined by the interactions within a small structural motif in the force-generating region of the protein that can be accurately modeled on computers using atomic representation and explicit solvent. Our simulations show that the transition between the two states is controlled by a small helix (SH1) located next to the relay helix and relay loop. A small translation in the position of SH1 away from the relay helix is seen to trigger the transition from "up" state to "down" state. The transition is driven by a cluster of hydrophobic residues I687, F487, and F506 that make significant contributions to the stability of both states. The proposed mechanism agrees well with the available structural and mutational studies.

Indexed as

Models, ChemicalBiomechanical PhenomenaComputer SimulationHydrophobic and Hydrophilic InteractionsModels, MolecularMyosinsProtein Structure, Tertiarysrc Homology DomainsMyosins

Identifiers

PMID22855405
PMCPMC3486948

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.