Evidence map›Paper›PMID 22854195›Full record

ArticleBioorganic & medicinal chemistry2012

Transition state analogue inhibitors of human methylthioadenosine phosphorylase and bacterial methylthioadenosine/S-adenosylhomocysteine nucleosidase incorporating acyclic ribooxacarbenium ion mimics.

Keith Clinch, Gary B Evans, Richard F G Fröhlich, Shivali A Gulab, Jemy A Gutierrez, Jennifer M Mason, Vern L Schramm, Peter C Tyler, Anthony D Woolhouse

Open access · greenAbstract read
In one paragraph

Article in Bioorganic & medicinal chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. New Antibiotic Candidates against Helicobacter pylori.Journal of the American Chemical Society · 2015
    Article
  6. Article
  7. Review
  8. (4R,5S)-4-Hy-droxy-meth-yl-5-[(methyl-sulfanyl)-meth-yl]-1,3-oxazolidin-2-one.Acta crystallographica. Section E, Structure reports online · 2012
    Article
  9. 7-Benzyl-oxymethyl-9-bromo-6-chloro-9-deaza-purine.Acta crystallographica. Section E, Structure reports online · 2009
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Keith ClinchCarbohydrate Chemistry, Industrial Research Limited, PO Box 31310, Lower Hutt 5040, New Zealand. k.clinch@irl.cri.nz
Gary B Evans
Richard F G Fröhlich
Shivali A Gulab
Jemy A Gutierrez
Jennifer M Mason
Vern L Schramm
Peter C Tyler
Anthony D Woolhouse
Albert Einstein College of Medicine · USGNS Science · NZ

Funding

TRANSITION STATE ANALYSIS OF ENZYMATIC REACTIONSR01GM041916 · NIGMS · YESHIVA UNIVERSITY · PI SCHRAMM, VERN L. · 1989 to 2023
$10.0M
TRANSITION STATE ANALYSIS OF ENZYMATIC REACTIONSR37GM041916 · NIGMS · YESHIVA UNIVERSITY · PI SCHRAMM, VERN L. · 1998 to 2007
$3.5M
Transition State Analogues as Modulators of DNA MethylationR01CA135405 · NCI · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI SCHRAMM, VERN L. · 2008 to 2018
$2.8M
NCI NIH HHS CA135405NCI NIH HHS R01 CA135405NIGMS NIH HHS GM41916NIGMS NIH HHS R01 GM041916NIGMS NIH HHS R37 GM041916
6 · The paper itself

Abstract

Several acyclic hydroxy-methylthio-amines with 3-5 carbon atoms were prepared and coupled via a methylene link to 9-deazaadenine. The products were tested for inhibition against human MTAP and Escherichia coli and Neisseria meningitidis MTANs and gave K(i) values as low as 0.23 nM. These results were compared to those obtained with 1st and 2nd generation inhibitors (1S)-1-(9-deazaadenin-9-yl)-1,4-dideoxy-1,4-imino-5-methylthio-D-ribitol (MT-Immucillin-A, 3) and (3R,4S)-1-[9-deazaadenin-9-yl)methyl]3-hydroxy-4-methylthiomethylpyrrolidine (MT-DADMe-Immucillin-A, 4). The best inhibitors were found to exhibit binding affinities of approximately 2- to 4-fold those of 3 but were significantly weaker than 4. Cleavage of the 2,3 carbon-carbon bond in MT-Immucillin-A (3) gave an acyclic product (79) with a 21,500 fold loss of activity against E. coli MTAN. In another case, N-methylation of a side chain secondary amine resulted in a 250-fold loss of activity against the same enzyme [(±)-65 vs (±)-68]. The inhibition results were also contrasted with those acyclic derivatives previously prepared as inhibitors for a related enzyme, purine nucleoside phosphorylase (PNP), where some inhibitors in the latter case were found to be more potent than their cyclic counterparts.

Indexed as

AdenosineBiomimetic MaterialsDose-Response Relationship, DrugEnzyme InhibitorsEscherichia coliHumansIonsMolecular ConformationNeisseria meningitidisN-Glycosyl HydrolasesPurine-Nucleoside PhosphorylasePyrrolidinesStructure-Activity Relationship1-(9-deazaadenin-9-yl)-1,4-dideoxy-1,4-imino-5-methylthioribitol1-(9-deazaadenin-9-yl)methyl-3-hydroxy-4-methylthiomethylpyrrolidine5'-methylthioadenosine phosphorylaseAdenosineadenosylhomocysteine nucleosidaseEnzyme InhibitorsIonsN-Glycosyl HydrolasesPurine-Nucleoside PhosphorylasePyrrolidines

Identifiers

PMID22854195
PMCPMC3438226
OpenAlexW2112983527

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.