Evidence map›Paper›PMID 22853955›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Coxsackievirus B3 mutator strains are attenuated in vivo.

Nina F Gnädig, Stéphanie Beaucourt, Grace Campagnola, Antonio V Bordería, Marta Sanz-Ramos, Peng Gong, Hervé Blanc, Olve B Peersen, Marco Vignuzzi

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 103 papers.

0numbers the graph read from it
0cells of the map it votes in
103citing papers in PubMed
9.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

103 citing papers in PubMed, 139 citations in OpenAlex.

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  18. Intra-Host Diversity of Dengue Virus in Mosquito Vectors.Frontiers in cellular and infection microbiology · 2022
    Review
  19. Article
  20. Article

43 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Nina F GnädigInstitut Pasteur, Centre National de la Recherche Scientifique Unité de Recherche Associée 3015, 75724 Paris Cedex 15, France.
Stéphanie Beaucourt
Grace Campagnola
Antonio V Bordería
Marta Sanz-Ramos
Peng Gong
Hervé Blanc
Olve B Peersen
Marco Vignuzzi
Institut Pasteur · FRColorado State University · USUniversité Paris Cité · FR

Funding

Assembly of Picornaviral Replication ComplexesR01AI059130 · NIAID · COLORADO STATE UNIVERSITY-FORT COLLINS · PI PEERSEN, OLVE BREIEN · 2004 to 2021
$4.6M
Assembly of Picornaviral Replication ComplexesR37AI059130 · NIAID · COLORADO STATE UNIVERSITY · PI Olve Breien Peersen · 2023 to 2026
$1.5M
Assembly of Picornaviral Replication ComplexesR56AI059130 · NIAID · COLORADO STATE UNIVERSITY · PI PEERSEN, OLVE BREIEN · 2009 to 2009
$324k
NIAID NIH HHS AI-059130NIAID NIH HHS R01 AI059130NIAID NIH HHS R37 AI059130NIAID NIH HHS R56 AI059130
6 · The paper itself

Abstract

Based on structural data of the RNA-dependent RNA polymerase, rational targeting of key residues, and screens for Coxsackievirus B3 fidelity variants, we isolated nine polymerase variants with mutator phenotypes, which allowed us to probe the effects of lowering fidelity on virus replication, mutability, and in vivo fitness. These mutator strains generate higher mutation frequencies than WT virus and are more sensitive to mutagenic treatments, and their purified polymerases present lower-fidelity profiles in an in vitro incorporation assay. Whereas these strains replicate with WT-like kinetics in tissue culture, in vivo infections reveal a strong correlation between mutation frequency and fitness. Variants with the highest mutation frequencies are less fit in vivo and fail to productively infect important target organs, such as the heart or pancreas. Furthermore, whereas WT virus is readily detectable in target organs 30 d after infection, some variants fail to successfully establish persistent infections. Our results show that, although mutator strains are sufficiently fit when grown in large population size, their fitness is greatly impacted when subjected to severe bottlenecking, which would occur during in vivo infection. The data indicate that, although RNA viruses have extreme mutation frequencies to maximize adaptability, nature has fine-tuned replication fidelity. Our work forges ground in showing that the mutability of RNA viruses does have an upper limit, where larger than natural genetic diversity is deleterious to virus survival.

Indexed as

MutationAnimalsBase SequenceCatalysisEnterovirus B, HumanGenetic VariationKineticsMaleMiceMice, Inbred C3HModels, GeneticModels, MolecularMolecular ConformationMolecular Sequence DataMutagenesis, Site-DirectedPhenotypeRNA-Dependent RNA Polymerase

Identifiers

PMID22853955
PMCPMC3427060
OpenAlexW2004500886

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.