Evidence map›Paper›PMID 22851646›Full record

ArticleGenetics2012

Comparative oncogenomics implicates the neurofibromin 1 gene (NF1) as a breast cancer driver.

Marsha D Wallace, Adam D Pfefferle, Lishuang Shen, Adrian J McNairn, Ethan G Cerami, Barbara L Fallon, Vera D Rinaldi, Teresa L Southard, Charles M Perou, John C Schimenti

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 71 citations in OpenAlex.

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  14. Point-activated ESR1Genes & development · 2020
    Article
  15. Article
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  17. Article
  18. Article
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  20. Ras and Rap1: A tale of two GTPases.Seminars in cancer biology · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Marsha D WallaceDepartment of Biomedical Sciences, Cornell University, Ithaca, NY 14853, USA.
Adam D Pfefferle
Lishuang Shen
Adrian J McNairn
Ethan G Cerami
Barbara L Fallon
Vera D Rinaldi
Teresa L Southard
Charles M Perou
John C Schimenti
Cornell University · USMemorial Sloan Kettering Cancer Center · USSegeberger Kliniken · DEUNC Lineberger Comprehensive Cancer Center

Funding

Tissue Procurement & PathologyP50CA058223 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KATHERINE A. HOADLEY · 1992 to 2026
$59.3M
Gene Expression Patterns in Human Tumors Identified Using Transcript SequencingU24CA143848 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI HAYES, DAVID N, PEROU, CHARLES M · 2009 to 2016
$20.8M
PREDOCTORAL TRAINING IN GENETICS AND DEVELOPMENTT32GM007617 · NIGMS · CORNELL UNIVERSITY ITHACA · PI BARBASH, DANIEL A · 1985 to 2021
$5.5M
NCI NIH HHS P50 CA058223NCI NIH HHS P50-CA58223-09A1NCI NIH HHS U24 CA143848NCI NIH HHS U24-CA143848NIGMS NIH HHS 5T32GM007617NIGMS NIH HHS T32 GM007617PHS HHS IT32HDO57854
6 · The paper itself

Abstract

Identifying genomic alterations driving breast cancer is complicated by tumor diversity and genetic heterogeneity. Relevant mouse models are powerful for untangling this problem because such heterogeneity can be controlled. Inbred Chaos3 mice exhibit high levels of genomic instability leading to mammary tumors that have tumor gene expression profiles closely resembling mature human mammary luminal cell signatures. We genomically characterized mammary adenocarcinomas from these mice to identify cancer-causing genomic events that overlap common alterations in human breast cancer. Chaos3 tumors underwent recurrent copy number alterations (CNAs), particularly deletion of the RAS inhibitor Neurofibromin 1 (Nf1) in nearly all cases. These overlap with human CNAs including NF1, which is deleted or mutated in 27.7% of all breast carcinomas. Chaos3 mammary tumor cells exhibit RAS hyperactivation and increased sensitivity to RAS pathway inhibitors. These results indicate that spontaneous NF1 loss can drive breast cancer. This should be informative for treatment of the significant fraction of patients whose tumors bear NF1 mutations.

Indexed as

Neurofibromin 1ras ProteinsAnimalsBreast NeoplasmsCells, CulturedComparative Genomic HybridizationDNA Copy Number VariationsFemaleGene Expression Regulation, NeoplasticGenomic InstabilityHumansMammary Neoplasms, AnimalMiceNeurofibromin 1ras Proteins

Identifiers

PMID22851646
PMCPMC3454871
OpenAlexW2124298418

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.