Evidence map›Paper›PMID 22851315›Full record

ArticleThe Journal of cell biology2012

HIV-1 Gag co-opts a cellular complex containing DDX6, a helicase that facilitates capsid assembly.

Jonathan C Reed, Britta Molter, Clair D Geary, John McNevin, Julie McElrath, Samina Giri, Kevin C Klein, Jaisri R Lingappa

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed, 1 pooled it
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 1 synthesis or guideline pooled it, 89 citations in OpenAlex.

  1. Pooled it
  2. Review
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  5. Role of DEAD/DEAH-box helicases in immunity, infection and cancers.Cell communication and signaling : CCS · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Jonathan C ReedDepartment of Global Health, University of Washington, Seattle, WA 98102, USA.
Britta Molter
Clair D Geary
John McNevin
Julie McElrath
Samina Giri
Kevin C Klein
Jaisri R Lingappa
University of Washington · USFred Hutch Cancer Center · US

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Marian Esvelt · 1985 to 2026
$296.4M
Interdisciplinary Tranining in Cancer ResearchT32CA080416 · NCI · UNIVERSITY OF WASHINGTON · PI STODDARD, BARRY L. · 1998 to 2023
$9.7M
The role of cellular factors in the HIV-1 capsid assembly pathwayR01AI048389 · NIAID · UNIVERSITY OF WASHINGTON · PI LINGAPPA, JAISRI R · 2002 to 2011
$3.4M
NCI NIH HHS P30 CA015704NCI NIH HHS T32 CA080416NIAID NIH HHS R01 AI048389NIAID NIH HHS R01AI48389
6 · The paper itself

Abstract

To produce progeny virus, human immunodeficiency virus type I (HIV-1) Gag assembles into capsids that package the viral genome and bud from the infected cell. During assembly of immature capsids, Gag traffics through a pathway of assembly intermediates (AIs) that contain the cellular adenosine triphosphatase ABCE1 (ATP-binding cassette protein E1). In this paper, we showed by coimmunoprecipitation and immunoelectron microscopy (IEM) that these Gag-containing AIs also contain endogenous processing body (PB)-related proteins, including AGO2 and the ribonucleic acid (RNA) helicase DDX6. Moreover, we found a similar complex containing ABCE1 and PB proteins in uninfected cells. Additionally, knockdown and rescue studies demonstrated that the RNA helicase DDX6 acts enzymatically to facilitate capsid assembly independent of RNA packaging. Using IEM, we localized the defect in DDX6-depleted cells to Gag multimerization at the plasma membrane. We also confirmed that DDX6 depletion reduces production of infectious HIV-1 from primary human T cells. Thus, we propose that assembling HIV-1 co-opts a preexisting host complex containing cellular facilitators such as DDX6, which the virus uses to catalyze capsid assembly.

Indexed as

AnimalsArgonaute ProteinsATP-Binding Cassette TransportersCapsidCell MembraneChlorocebus aethiopsCOS CellsDEAD-box RNA HelicasesGene Products, gagHIV-1HumansMicroscopy, ImmunoelectronMutationProto-Oncogene ProteinsT-LymphocytesABCE1 protein, humanAGO2 protein, humanArgonaute ProteinsATP-Binding Cassette TransportersDDX6 protein, humanDEAD-box RNA HelicasesGene Products, gagProto-Oncogene Proteins

Identifiers

PMID22851315
PMCPMC3413349
OpenAlexW1988013652

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.