Evidence map›Paper›PMID 22850746›Full record

ArticleNucleic acids research2012

2'-Deoxyriboguanylurea, the primary breakdown product of 5-aza-2'-deoxyribocytidine, is a mutagen, an epimutagen, an inhibitor of DNA methyltransferases and an inducer of 5-azacytidine-type fragile sites.

Katarzyna Lamparska, Jarrod Clark, Gail Babilonia, Victoria Bedell, Wesley Yip, Steven S Smith

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 24 citations in OpenAlex.

  1. NAR molecular medicine · 2024
    Article
  2. Review
  3. Article
  4. Review
  5. Maintaining the unmethylated state.Clinical epigenetics · 2013
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Katarzyna LamparskaBeckman Research Institute and Division of Urology and Urologic Oncology, City of Hope, 1500 E. Duarte Rd., Duarte, CA 91010-3000, USA.
Jarrod Clark
Gail Babilonia
Victoria Bedell
Wesley Yip
Steven S Smith
Beckman Research InstituteGynecologic Oncology Group · USCity of Hope · US

Funding

Transgenic Mouse FacilityP30CA033572 · NCI · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI STANLEY R. HAMILTON · 1985 to 2026
$86.3M
Thiroredoxin Targeted Nanoparticles for Cancer ResearchR03CA136055 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI SMITH, STEVEN SIDNEY · 2008 to 2009
$187k
NCI NIH HHS 5P30CA033572-27NCI NIH HHS CA10252NCI NIH HHS CA136055
6 · The paper itself

Abstract

5-Aza-2'-deoxycytidine (5azaC-dR) has been employed as an inhibitor of DNA methylation, a chemotherapeutic agent, a clastogen, a mutagen, an inducer of fragile sites and a carcinogen. However, its effects are difficult to quantify because it rapidly breaks down in aqueous solution to the stable compound 2'-deoxyriboguanylurea (GuaUre-dR). Here, we used a phosphoramidite that permits the introduction of GuaUre-dR at defined positions in synthetic oligodeoxynucleotides to demonstrate that it is a potent inhibitor of human DNA methyltransferase 1 (hDNMT1) and the bacterial DNA methyltransferase (M.EcoRII) and that it is a mutagen that can form productive base pairs with either Guanine or Cytosine. Pure GuaUre-dR was found to be an effective demethylating agent and was able to induce 5azaC-dR type fragile sites FRA1J and FRA9E in human cells. Moreover, we report that demethylation associated with C:G → G:C transversion and C:G → T:A transition mutations was observed in human cells exposed to pure GuaUre-dR. The data suggest that most of the effects attributed to 5azaC-dR are exhibited by its stable primary breakdown product.

Indexed as

Chromosome Fragile SitesAzacitidineBase SequenceCell Line, TumorDecitabineDeoxyriboseDNA (Cytosine-5-)-Methyltransferase 1DNA (Cytosine-5-)-MethyltransferasesDNA-Cytosine MethylasesDNA Modification MethylasesEnzyme InhibitorsGuanidinesHumansMolecular Sequence DataMutagenesisMutagens2'-deoxyriboguanylureaAzacitidineDecitabineDeoxyriboseDNA (Cytosine-5-)-Methyltransferase 1DNA (Cytosine-5-)-MethyltransferasesDNA-Cytosine MethylasesDNA modification methylase EcoRIIDNA Modification MethylasesEnzyme InhibitorsGuanidinesMutagensOligodeoxyribonucleotides

Identifiers

PMID22850746
PMCPMC3479176
OpenAlexW2124043981

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.