Evidence map›Paper›PMID 22848601›Full record

ArticlePloS one2012

Foxi2 is an animally localized maternal mRNA in Xenopus, and an activator of the zygotic ectoderm activator Foxi1e.

Sang-Wook Cha, Meredith McAdams, Jay Kormish, Christopher Wylie, Matthew Kofron

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
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  11. Molecular specification of germ layers in vertebrate embryos.Cellular and molecular life sciences : CMLS · 2016
    Review
  12. Novel copy-number variants in a population-based investigation of classic heterotaxy.Genetics in medicine : official journal of the American College of Medical Genetics · 2015
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Sang-Wook ChaCincinnati Children's Hospital Medical Center, Cincinnati, Ohio, United States of America.
Meredith McAdams
Jay Kormish
Christopher Wylie
Matthew Kofron
Cincinnati Children's Hospital Medical Center · USUniversity of Calgary · CA

Funding

Ectoderm Formation in the Early Xenopus EmbryoR01HD045737 · NICHD · CINCINNATI CHILDRENS HOSP MED CTR · PI KOFRON, MATTHEW M · 2004 to 2014
$3.4M
NICHD NIH HHS R01 HD045737NICHD NIH HHS R01HD45737
6 · The paper itself

Abstract

Foxi1e is a zygotic transcription factor that is essential for the expression of early ectodermal genes. It is expressed in a highly specific pattern, only in the deep cell layers of the animal hemisphere, and in a mosaic pattern in which expressing cells are interspersed with non-expressing cells. Previous work has shown that several signals in the blastula control this expression pattern, including nodals, the TGFβ family member Vg1, and Notch. However, these are all inhibitory, which raises the question of what activates Foxi1e. In this work, we show that a related Forkhead family protein, Foxi2, is a maternal activator of Foxi1e. Foxi2 mRNA is maternally encoded, and highly enriched in animal hemisphere cells of the blastula. ChIP assays show that it acts directly on upstream regulatory elements of Foxi1e. Its effect is specific, since animal cells depleted of Foxi2 are able to respond normally to mesoderm inducing signals from vegetal cells. Foxi2 thus acts as a link between the oocyte and the early pathway to ectoderm, in a similar fashion to the vegetally localized VegT acts to initiate endoderm and mesoderm formation.

Indexed as

AnimalsBase SequenceBlastulaEctodermForkhead Transcription FactorsGene Expression Regulation, DevelopmentalMesodermPromoter Regions, GeneticProtein TransportRNA, Messenger, StoredSignal TransductionT-Box Domain ProteinsTranscription FactorsXenopus laevisXenopus ProteinsZygoteForkhead Transcription FactorsFOXI1 protein, XenopusFoxI2 protein, XenopusRNA, Messenger, StoredT-Box Domain ProteinsTranscription FactorsVegT protein, XenopusXenopus Proteins

Identifiers

PMID22848601
PMCPMC3407068
OpenAlexW2038041317

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.