ArticleMammalian genome : official journal of the International Mammalian Genome Society2012
eMouseAtlas, EMAGE, and the spatial dimension of the transcriptome.
Article in Mammalian genome : official journal of the International Mammalian Genome Society, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
24 citing papers in PubMed.
- Depth-Resolved Attenuation Coefficient Quantification During Murine Embryonic Brain Development.Journal of biophotonics · 2025Article
- Integrated analysis of transcriptome and metabolome revealed biological basis of sows from estrus to lactation.iScience · 2023Article
- Emergence of structure in mouse embryos: Structural Entropy morphometry applied to digital models of embryonic anatomy.Journal of anatomy · 2019Article
- Survey of Human Chromosome 21 Gene Expression Effects on Early Development inG3 (Bethesda, Md.) · 2018Article
- The Image Data Resource: A Bioimage Data Integration and Publication Platform.Nature methods · 2017Article
- Identifying Genetic Sources of Phenotypic Heterogeneity in Orofacial Clefts by Targeted Sequencing.Birth defects research · 2017Article
- A Comprehensive Mouse Transcriptomic BodyMap across 17 Tissues by RNA-seq.Scientific reports · 2017Article
- eMouseAtlas: An atlas-based resource for understanding mammalian embryogenesis.Developmental biology · 2017Review
- The 'straight mouse': defining anatomical axes in 3D embryo models.Database : the journal of biological databases and curation · 2017Article
- PhenoImageShare: an image annotation and query infrastructure.Journal of biomedical semantics · 2016Article
- Representation of anatomy in online atlases and databases: a survey and collection of patterns for interface design.BMC developmental biology · 2016Article
- Atlas Toolkit: Fast registration of 3D morphological datasets in the absence of landmarks.Scientific reports · 2016Article
- Identification and annotation of conserved promoters and macrophage-expressed genes in the pig genome.BMC genomics · 2015Article
- eMouseAtlas informatics: embryo atlas and gene expression database.Mammalian genome : official journal of the International Mammalian Genome Society · 2015Article
- Developing the eHistology Atlas.Database : the journal of biological databases and curation · 2015Article
- Linking gene expression to phenotypes via pathway information.Journal of biomedical semantics · 2015Article
- The gene expression database for mouse development (GXD): putting developmental expression information at your fingertips.Developmental dynamics : an official publication of the American Association of Anatomists · 2014Review
- DFLAT: functional annotation for human development.BMC bioinformatics · 2014Article
- Cellular specificity of the blood-CSF barrier for albumin transfer across the choroid plexus epithelium.PloS one · 2014Article
- A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages.Nature communications · 2014Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
15 authors.
Funding
Abstract
eMouseAtlas (www.emouseatlas.org) is a comprehensive online resource to visualise mouse development and investigate gene expression in the mouse embryo. We have recently deployed a completely redesigned Mouse Anatomy Atlas website (www.emouseatlas.org/emap/ema) that allows users to view 3D embryo reconstructions, delineated anatomy, and high-resolution histological sections. A new feature of the website is the IIP3D web tool that allows a user to view arbitrary sections of 3D embryo reconstructions using a web browser. This feature provides interactive access to very high-volume 3D images via a tiled pan-and-zoom style interface and circumvents the need to download large image files for visualisation. eMouseAtlas additionally includes EMAGE (Edinburgh Mouse Atlas of Gene Expression) (www.emouseatlas.org/emage), a freely available, curated online database of in situ gene expression patterns, where gene expression domains extracted from raw data images are spatially mapped into atlas embryo models. In this way, EMAGE introduces a spatial dimension to transcriptome data and allows exploration of the spatial similarity between gene expression patterns. New features of the EMAGE interface allow complex queries to be built, and users can view and compare multiple gene expression patterns. EMAGE now includes mapping of 3D gene expression domains captured using the imaging technique optical projection tomography. 3D mapping uses WlzWarp, an open-source software tool developed by eMouseAtlas.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.