Evidence map›Paper›PMID 22847197›Full record

ArticleMedical science monitor : international medical journal of experimental and clinical research2012

Analysis of bacteria from intestinal tract of FAP patients for the presence of APC-like sequences.

Vladimir Holec, Sona Ciernikova, Lenka Wachsmannova, Zuzana Adamcikova, Katarina Hainova, Michal Mego, Viola Stevurkova, Ludovit Danihel, Anna Liskova, Vladimir Zajac

Open access · hybridAbstract read
In one paragraph

Article in Medical science monitor : international medical journal of experimental and clinical research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.4field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 2 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Vladimir HolecInstitute of Pathological Anatomy, Medical Faculty, Comenius University, Bratislava, Slovakia. mudr.holec@gmail.com
Sona Ciernikova
Lenka Wachsmannova
Zuzana Adamcikova
Katarina Hainova
Michal Mego
Viola Stevurkova
Ludovit Danihel
Anna Liskova
Vladimir Zajac
Cancer Research Institute of the Slovak Academy of Sciences · SKComenius University Bratislava · SKSlovak Academy of Sciences · SKVysoká Škola Zdravotníctva a Sociálnej Práce sv. Alžbety · SK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundFamilial adenomatous polyposis (FAP) is a hereditary disease induced by germ-line mutations in the tumor suppressor APC gene. These initiate the early stages of the adenoma-carcinoma sequence in familial, but also in sporadic (in 80% to 90%), colon tumorigenesis. We found the presence of APC-like sequences in bacteria of FAP patients. MATERIAL/

methodsWe analyzed bacteria isolated from FAP patients' rectal swabs. Total bacterial DNA was isolated and analyzed for detection of APC-like sequences using PCR. We also tested DNA homology rate and APC-like protein production.

resultsWe collected blood samples and rectal swabs from patients with confirmed diagnosis of FAP. They were analyzed for presence of sections from exon 15 of the APC gene. Most positive results were found in sections located exactly in the area called the MCR (mutation cluster region), where the highest frequency of APC gene mutations were identified. By sequencing PCR products from bacteria in section F-G together with a patient's DNA sample and human APC gene, we found a more than 90% DNA homology rate. We also confirmed production of APC-like protein using Western blotting.

conclusionsOur results suggested two hypotheses. The APC-like protein might have same function as a truncated APC product, which is synthesized in most cases of mutations of APC gene in the MCR region in colorectal cancer cells. Alternatively, we can consider the possible existence of horizontal transfer of genetic information between eukaryotic and prokaryotic cells. Our study can be considered as a pilot project. For confirmation of our hypotheses, further research is needed.

Indexed as

Adenomatous Polyposis ColiAdenomatous Polyposis Coli ProteinBacteriaBase SequenceBlotting, WesternDNA, BacterialExonsHumansIntestinesMolecular Sequence DataPolymerase Chain ReactionAdenomatous Polyposis Coli ProteinDNA, Bacterial

Identifiers

PMID22847197
PMCPMC3560702
OpenAlexW2096424723

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.