Evidence map›Paper›PMID 22847075›Full record

ArticlePlant molecular biology2012

Transposon insertion in a cinnamyl alcohol dehydrogenase gene is responsible for a brown midrib1 mutation in maize.

Wei Chen, Nathan VanOpdorp, Dennis Fitzl, Jagdish Tewari, Peter Friedemann, Tom Greene, Steve Thompson, Siva Kumpatla, Peizhong Zheng

Abstract read
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In one paragraph

Article in Plant molecular biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 60 citations in OpenAlex.

  1. Article
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  12. Characterization of Two NewFrontiers in plant science · 2020
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  13. Article
  14. Article
  15. Article
  16. MaizeThe Plant cell · 2017
    Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Wei ChenDow AgroSciences LLC, 9330 Zionsville Road, Indianapolis, IN 46268, USA.
Nathan VanOpdorp
Dennis Fitzl
Jagdish Tewari
Peter Friedemann
Tom Greene
Steve Thompson
Siva Kumpatla
Peizhong Zheng
Pioneer Hi-Bred · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Maize brown midrib1 (bm1) mutant plants have reduced lignin content and offer significant advantages when used in silage and biofuel applications. Cinnamyl alcohol dehydrogenase (CAD) catalyzes the conversion of hydroxycinnamyl aldehydes to monolignols, a key step in lignin biosynthesis. Maize CAD2 has been implicated as the underlying gene for bm1 phenotypes since bm1 plants have reduced CAD activity and lower CAD2 transcript level. Here, we describe a Dow AgroSciences maize bm1 mutant (bm1-das1) that contains a 3,444-bp transposon insertion in the first intron of CAD2 gene. As a result of chimeric RNA splicing, cad2 mRNA from bm1-das1 contains a 409-bp insert between its 1st and 2nd exons. This insertion creates a premature stop codon and is predicted to result in a truncated protein of 48 amino acids (AA), compared to 367 AA for the wild type (WT) CAD2. We have also sequenced cad2 from the reference allele bm1-ref in 515D bm1 stock and showed that it contains a two-nucleotide (AC) insertion in the 3rd exon, which is predicted to result in a truncated protein of 147 AA. The levels of cad2 mRNA in the midribs of bm1-das1 and bm1-ref are reduced by 91 and 86 % respectively, leading to reductions in total lignin contents by 24 and 30 %. Taken together, our data show that mutations in maize CAD2 are responsible for maize bm1 phenotypes. Based on specific changes in bm1-das1 and bm1-ref, high throughput TaqMan and KBioscience's allele specific PCR assays capable of differentiating mutant and WT alleles have been developed to accelerate bm1 molecular breeding.

Indexed as

Alcohol OxidoreductasesAllelesBase SequenceCloning, MolecularCodon, NonsenseDNA, PlantFrameshift MutationGene Expression Regulation, EnzymologicGene Expression Regulation, PlantLigninMolecular Sequence DataMutagenesis, InsertionalMutationPhenotypePlant LeavesPlant ProteinsAlcohol Oxidoreductasescinnamyl alcohol dehydrogenaseCodon, NonsenseDNA, PlantLigninPlant ProteinsRNA, MessengerRNA, Plant

Identifiers

PMID22847075
OpenAlexW2009627793

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.