Evidence map›Paper›PMID 22846040›Full record

ArticleBiochemistry2012

Insights into the inhibition of the p90 ribosomal S6 kinase (RSK) by the flavonol glycoside SL0101 from the 1.5 Å crystal structure of the N-terminal domain of RSK2 with bound inhibitor.

Darkhan Utepbergenov, Urszula Derewenda, Natalya Olekhnovich, Gabriela Szukalska, Budhaditya Banerjee, Michael K Hilinski, Deborah A Lannigan, P Todd Stukenberg, Zygmunt S Derewenda

Abstract read
In one paragraph

Article in Biochemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 44 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. RiSKs in Computational Modeling of Isoform-Selective RSK Inhibitors.Journal of chemical information and modeling · 2025
    Review
  5. Article
  6. Article
  7. Classifying protein kinase conformations with machine learning.Protein science : a publication of the Protein Society · 2024
    Article
  8. Article
  9. Comparison of Conformational Analyses of Naturally Occurring Flavonoid-Journal of chemical information and modeling · 2023
    Article
  10. Therapeutic targeting of p90 ribosomal S6 kinase.Frontiers in cell and developmental biology · 2023
    Review
  11. Identifying requirements for RSK2 specific inhibitors.Journal of enzyme inhibition and medicinal chemistry · 2021
    Article
  12. Article
  13. Molecular Docking Compounds of Cinnamaldehyde Derivatives as Anticancer Agents.Asian Pacific journal of cancer prevention : APJCP · 2021
    Article
  14. Article
  15. Article
  16. Regioselective Synthesis of aOrganic letters · 2020
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Darkhan UtepbergenovDepartment of Molecular Physiology and Biological Physics, University of Virginia, School of Medicine, Charlottesville, VA 22908, USA.
Urszula Derewenda
Natalya Olekhnovich
Gabriela Szukalska
Budhaditya Banerjee
Michael K Hilinski
Deborah A Lannigan
P Todd Stukenberg
Zygmunt S Derewenda
University of Łódź · PL

Funding

Women's Oncology Program - WONP30CA044579 · NCI · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI Thomas P. Loughran · 1987 to 2026
$72.1M
THREE DIMENSIONAL DISTRIBUTION OF ION TRANSPORTING MEMBRANE CHANNELS/ORGANELLESP01HL048807 · NHLBI · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI SOMLYO, AVRIL V. · 1992 to 2008
$14.0M
Molecular Mechanisms of RhoA-mediated Ca2+Sensitization in Vascular Smooth MuscleR01GM086457 · NIGMS · UNIVERSITY OF VIRGINIA · PI DEREWENDA, URSZULA, DEREWENDA, ZYGMUNT S · 2009 to 2017
$5.4M
NCI NIH HHS P30 CA044579NCI NIH HHS P30 CA44579NHLBI NIH HHS P01 HL048807NIGMS NIH HHS R01 GM086457
6 · The paper itself

Abstract

The p90 ribosomal S6 family of kinases (RSK) are potential drug targets, due to their involvement in cancer and other pathologies. There are currently only two known selective inhibitors of RSK, but the basis for selectivity is not known. One of these inhibitors is a naturally occurring kaempferol-α-L-diacetylrhamnoside, SL0101. Here, we report the crystal structure of the complex of the N-terminal kinase domain of the RSK2 isoform with SL0101 at 1.5 Å resolution. The refined atomic model reveals unprecedented structural reorganization of the protein moiety, as compared to the nucleotide-bound form. The entire N-lobe, the hinge region, and the αD-helix undergo dramatic conformational changes resulting in a rearrangement of the nucleotide binding site with concomitant formation of a highly hydrophobic pocket spatially suited to accommodate SL0101. These unexpected results will be invaluable in further optimization of the SL0101 scaffold as a promising lead for a novel class of kinase inhibitors.

Indexed as

BenzopyransBinding SitesCrystallizationCrystallography, X-RayMannosidesModels, MolecularMonosaccharidesProanthocyanidinsProtein ConformationProtein Structure, TertiaryRibosomal Protein S6 Kinases, 90-kDaafzelinBenzopyransMannosidesMonosaccharidesProanthocyanidinsRibosomal Protein S6 Kinases, 90-kDaSL0101

Identifiers

PMID22846040
PMCPMC3462495
OpenAlexW2148210995

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.