Evidence map›Paper›PMID 22843994›Full record

ArticleMolecular & cellular proteomics : MCP2012

A novel method for the simultaneous enrichment, identification, and quantification of phosphopeptides and sialylated glycopeptides applied to a temporal profile of mouse brain development.

Giuseppe Palmisano, Benjamin L Parker, Kasper Engholm-Keller, Sara Eun Lendal, Katarzyna Kulej, Melanie Schulz, Veit Schwämmle, Mark E Graham, Henrik Saxtorph, Stuart J Cordwell and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 126 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Giuseppe PalmisanoDepartment of Biochemistry and Molecular Biology, University of Southern Denmark, and Biomedical Laboratory, Odense University Hospital, Campusvej 55, 5230 Odense M, Denmark.
Benjamin L Parker
Kasper Engholm-Keller
Sara Eun Lendal
Katarzyna Kulej
Melanie Schulz
Veit Schwämmle
Mark E Graham
Henrik Saxtorph
Stuart J Cordwell
Martin R Larsen
University of Southern Denmark · DKUniversity of Sydney · AUChildren's Medical Research Institute · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We describe a method that combines an optimized titanium dioxide protocol and hydrophilic interaction liquid chromatography to simultaneously enrich, identify and quantify phosphopeptides and formerly N-linked sialylated glycopeptides to monitor changes associated with cell signaling during mouse brain development. We initially applied the method to enriched membrane fractions from HeLa cells, which allowed the identification of 4468 unique phosphopeptides and 1809 formerly N-linked sialylated glycopeptides. We subsequently combined the method with isobaric tagging for relative quantification to compare changes in phosphopeptide and formerly N-linked sialylated glycopeptide abundance in the developing mouse brain. A total of 7682 unique phosphopeptide sequences and 3246 unique formerly sialylated glycopeptides were identified. Moreover 669 phosphopeptides and 300 formerly N-sialylated glycopeptides differentially regulated during mouse brain development were detected. This strategy allowed us to reveal extensive changes in post-translational modifications from postnatal mice from day 0 until maturity at day 80. The results of this study confirm the role of sialylation in organ development and provide the first extensive global view of dynamic changes between N-linked sialylation and phosphorylation.

Indexed as

Amino Acid SequenceAnimalsBrainCluster AnalysisFuzzy LogicGlycopeptidesHeLa CellsHumansIsotope LabelingMass SpectrometryMiceMolecular Sequence DataN-Acetylneuraminic AcidNeural Cell Adhesion MoleculesPhosphopeptidesProteomicsGlycopeptidesN-Acetylneuraminic AcidNcam2 protein, mouseNeural Cell Adhesion MoleculesPhosphopeptides

Identifiers

PMID22843994
PMCPMC3494194
OpenAlexW2130411730

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.