Evidence map›Paper›PMID 22843868›Full record

ArticleJournal of virology2012

Complete genome sequence of Staphylococcus aureus bacteriophage GH15.

Jingmin Gu, Xiaohe Liu, Rong Lu, Yue Li, Jun Song, Liancheng Lei, Changjiang Sun, Xin Feng, Chongtao Du, Hao Yu and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 35 citations in OpenAlex.

  1. Genome Sequence of Staphylococcus aureus Phage ESa2.Microbiology resource announcements · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Jingmin GuCollege of Animal Science and Veterinary Medicine, Jilin University, Changchun, People's Republic of China.
Xiaohe Liu
Rong Lu
Yue Li
Jun Song
Liancheng Lei
Changjiang Sun
Xin Feng
Chongtao Du
Hao Yu
Yongjun Yang
Wenyu Han
Jilin University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

GH15 is a polyvalent phage that shows activity against a wide range of Staphylococcus aureus strains. In this work, the complete genome sequence of GH15 was determined. With a genome size of 139,806 bp (double-stranded DNA), GH15 is the largest staphylococcal phage sequenced to date. The complete genome encodes 214 open reading frames (ORFs) and 4 tRNAs. The closest relatives are the class III staphylococcal myobacteriophages, including K, A5W, ISP, Sb-1, and G1. Interestingly, although corresponding gene sequences demonstrate very high similarity, all the introns and inteins present in the phages listed above are absent in GH15. As such, GH15 can be considered phylogenetically unique among the staphylococcal myobacteriophages, indicating the diversity of this family.

Indexed as

Genome, ViralBacteriophagesDNADNA, ViralMolecular Sequence DataOpen Reading FramesPhylogenyRNA, TransferSequence Analysis, DNAStaphylococcus aureusDNADNA, ViralRNA, Transfer

Identifiers

PMID22843868
PMCPMC3421715
OpenAlexW2120361575

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.