Evidence map›Paper›PMID 22843525›Full record

ArticleApplied and environmental microbiology2012

Identification of a gene involved in the synthesis of a dipeptidyl peptidase IV inhibitor in Aspergillus oryzae.

Kazuhiko Imamura, Yoshihito Tsuyama, Terukage Hirata, Sumihiro Shiraishi, Kazutoshi Sakamoto, Osamu Yamada, Osamu Akita, Hitoshi Shimoi

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. RNA-Seq Based Transcriptome Analysis ofJournal of fungi (Basel, Switzerland) · 2022
    Article
  3. Article
  4. Article
  5. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Kazuhiko ImamuraHealthcare Research Institute, Wakunaga Pharmaceutical Co. Ltd., Akitakata, Japan. imamura_kz@wakunaga.co.jp
Yoshihito Tsuyama
Terukage Hirata
Sumihiro Shiraishi
Kazutoshi Sakamoto
Osamu Yamada
Osamu Akita
Hitoshi Shimoi
Wakunaga (Japan) · JPHiroshima University · JPNational Research Institute of Brewing · JPJissen Women's University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

WYK-1 is a dipeptidyl peptidase IV inhibitor produced by Aspergillus oryzae strain AO-1. Because WYK-1 is an isoquinoline derivative consisting of three l-amino acids, we hypothesized that a nonribosomal peptide synthetase was involved in its biosynthesis. We identified 28 nonribosomal peptide synthetase genes in the sequenced genome of A. oryzae RIB40. These genes were also identified in AO-1. Among them, AO090001000009 (wykN) was specifically expressed under WYK-1-producing conditions in AO-1. Therefore, we constructed wykN gene disruptants of AO-1 after nonhomologous recombination was suppressed by RNA interference to promote homologous recombination. Our results demonstrated that the disruptants did not produce WYK-1. Furthermore, the expression patterns of 10 genes downstream of wykN were similar to the expression pattern of wykN under several conditions. Additionally, homology searches revealed that some of these genes were predicted to be involved in WYK-1 biosynthesis. Therefore, we propose that wykN and the 10 genes identified in this study constitute the WYK-1 biosynthetic gene cluster.

Indexed as

Aspergillus oryzaeBiosynthetic PathwaysDipeptidyl Peptidase 4DNA, FungalEnzyme InhibitorsGene DeletionIsoquinolinesMolecular Sequence DataMultigene FamilyPeptide SynthasesSequence Analysis, DNADipeptidyl Peptidase 4DNA, FungalEnzyme InhibitorsisoquinolineIsoquinolinesnon-ribosomal peptide synthasePeptide Synthases

Identifiers

PMID22843525
PMCPMC3457513
OpenAlexW2147798585

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.