Evidence map›Paper›PMID 22842228›Full record

ArticleNature genetics2012

Exome sequencing identifies recurrent somatic RAC1 mutations in melanoma.

Michael Krauthammer, Yong Kong, Byung Hak Ha, Perry Evans, Antonella Bacchiocchi, James P McCusker, Elaine Cheng, Matthew J Davis, Gerald Goh, Murim Choi and 20 more

Abstract read
In one paragraph

Article in Nature genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 688 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
688citing papers in PubMed, 3 pooled it
48.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

688 citing papers in PubMed, 3 syntheses or guidelines pooled it, 1,178 citations in OpenAlex.

  1. Guideline
  2. Pooled it
  3. Pooled it
  4. Atezolizumab plus Bevacizumab in Patients with Unresectable or Metastatic Mucosal Melanoma: A Multicenter, Open-Label, Single-Arm Phase II Study.Clinical cancer research : an official journal of the American Association for Cancer Research · 2022
    Trial
  5. Review
  6. GTP biosynthesis is a therapeutic vulnerability in Rac1-mutant melanoma.bioRxiv : the preprint server for biology · 2026
    Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. iScience · 2026
    Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. The cytokinesis regulator RacGAP1 is a Rac1-specific GAP on membranes.Protein science : a publication of the Protein Society · 2026
    Article
  18. Article
  19. Review
  20. Article

628 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors at 5 institutions in 2 countries.

Michael KrauthammerDepartment of Pathology, Yale University School of Medicine, New Haven, Connecticut, USA.
Yong Kong
Byung Hak Ha
Perry Evans
Antonella Bacchiocchi
James P McCusker
Elaine Cheng
Matthew J Davis
Gerald Goh
Murim Choi
Stephan Ariyan
Deepak Narayan
Ken Dutton-Regester
Ana Capatana
Edna C Holman
Marcus Bosenberg
Mario Sznol
Harriet M Kluger
Douglas E Brash
David F Stern
Miguel A Materin
Roger S Lo
Shrikant Mane
Shuangge Ma
Kenneth K Kidd
Nicholas K Hayward
Richard P Lifton
Joseph Schlessinger
Titus J Boggon
Ruth Halaban
Yale University · USQIMR Berghofer Medical Research Institute · AUQueensland University of Technology · AUUniversity of California, Los Angeles · USYale Cancer Center · US

Funding

Yale SPORE in Skin CancerP50CA121974 · NCI · YALE UNIVERSITY · PI DAVID F STERN · 2006 to 2026
$43.9M
MEDICAL INFORMATICS RESEARCH TRAINING AT YALET15LM007056 · NLM · YALE UNIVERSITY · PI Mark Bender Gerstein, LUCILA OHNO-MACHADO · 1987 to 2026
$22.2M
NCI NIH HHS 1 P50 CA121974NCI NIH HHS P50 CA121974NLM NIH HHS 5T15LM007056NLM NIH HHS T15 LM007056
6 · The paper itself

Abstract

We characterized the mutational landscape of melanoma, the form of skin cancer with the highest mortality rate, by sequencing the exomes of 147 melanomas. Sun-exposed melanomas had markedly more ultraviolet (UV)-like C>T somatic mutations compared to sun-shielded acral, mucosal and uveal melanomas. Among the newly identified cancer genes was PPP6C, encoding a serine/threonine phosphatase, which harbored mutations that clustered in the active site in 12% of sun-exposed melanomas, exclusively in tumors with mutations in BRAF or NRAS. Notably, we identified a recurrent UV-signature, an activating mutation in RAC1 in 9.2% of sun-exposed melanomas. This activating mutation, the third most frequent in our cohort of sun-exposed melanoma after those of BRAF and NRAS, changes Pro29 to serine (RAC1(P29S)) in the highly conserved switch I domain. Crystal structures, and biochemical and functional studies of RAC1(P29S) showed that the alteration releases the conformational restraint conferred by the conserved proline, causes an increased binding of the protein to downstream effectors, and promotes melanocyte proliferation and migration. These findings raise the possibility that pharmacological inhibition of downstream effectors of RAC1 signaling could be of therapeutic benefit.

Indexed as

MutationAgedAged, 80 and overCase-Control StudiesDNA Mutational AnalysisExomeFemaleGene FrequencyGenetic Predisposition to DiseaseHumansMaleMelanomaMiddle AgedModels, MolecularProto-Oncogene Proteins B-rafProto-Oncogene Proteins p21(ras)BRAF protein, humanProto-Oncogene Proteins B-rafProto-Oncogene Proteins p21(ras)rac1 GTP-Binding ProteinRAC1 protein, human

Identifiers

PMID22842228
PMCPMC3432702
OpenAlexW2035000040

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.