Evidence map›Paper›PMID 22840920›Full record

ArticleCell2012

Evolutionary history and adaptation from high-coverage whole-genome sequences of diverse African hunter-gatherers.

Joseph Lachance, Benjamin Vernot, Clara C Elbers, Bart Ferwerda, Alain Froment, Jean-Marie Bodo, Godfrey Lema, Wenqing Fu, Thomas B Nyambo, Timothy R Rebbeck and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 142 papers.

0numbers the graph read from it
0cells of the map it votes in
142citing papers in PubMed
21.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

142 citing papers in PubMed, 352 citations in OpenAlex.

  1. Genomic evidence for shared common ancestry of East African hunting-gathering populations and insights into local adaptation.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Trial
  2. Article
  3. Article
  4. Article
  5. Global impact of micronutrients in modern human evolution.American journal of human genetics · 2025
    Article
  6. Article
  7. Dentition of the Mugharet El'Aliya Fossil Human Maxilla, Morocco.American journal of biological anthropology · 2025
    Article
  8. Article
  9. Ancestral Origins and Admixture History of Kazakhs.Molecular biology and evolution · 2024
    Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Review
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  19. Article
  20. Article

82 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 4 countries.

Joseph LachanceDepartment of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA.
Benjamin Vernot
Clara C Elbers
Bart Ferwerda
Alain Froment
Jean-Marie Bodo
Godfrey Lema
Wenqing Fu
Thomas B Nyambo
Timothy R Rebbeck
Kun Zhang
Joshua M Akey
Sarah A Tishkoff
University of Pennsylvania · USUniversity of Washington · USMuhimbili University of Health and Allied Sciences · TZMinistry of Scientific Research and Innovation · CMMusée de l'Homme · FRUniversity of California San Diego · US

Funding

Translational Research Support CoreP30ES013508 · NIEHS · UNIVERSITY OF PENNSYLVANIA · PI Rebecca A Simmons · 2006 to 2026
$35.3M
African Odyssey: An Integrative Genomics Analysis of Complex Physiologic TraitsDP1ES022577 · NIEHS · UNIVERSITY OF PENNSYLVANIA · PI TISHKOFF, SARAH ANNE · 2012 to 2013
$1.6M
Variation at Malaria Resistance Genes in AfricansR01GM076637 · NIGMS · UNIV OF MARYLAND, COLLEGE PARK · PI TISHKOFF, SARAH ANNE · 2006 to 2009
$1.2M
Population Genomics of Geographically and Ethnically Diverse AfricansF32HG006648 · NHGRI · UNIVERSITY OF PENNSYLVANIA · PI LACHANCE, JOSEPH L. · 2012 to 2014
$154k
NCCDPHP CDC HHS 8 DP1 ES022557-04NHGRI NIH HHS F32 HG006648NHGRI NIH HHS F32HG006648-01NIEHS NIH HHS DP1 ES022577NIEHS NIH HHS P30 ES013508NIEHS NIH HHS P30-ES013508-07NIGMS NIH HHS R01 GM076637NIGMS NIH HHS R01GM076637
6 · The paper itself

Abstract

To reconstruct modern human evolutionary history and identify loci that have shaped hunter-gatherer adaptation, we sequenced the whole genomes of five individuals in each of three different hunter-gatherer populations at > 60× coverage: Pygmies from Cameroon and Khoesan-speaking Hadza and Sandawe from Tanzania. We identify 13.4 million variants, substantially increasing the set of known human variation. We found evidence of archaic introgression in all three populations, and the distribution of time to most recent common ancestors from these regions is similar to that observed for introgressed regions in Europeans. Additionally, we identify numerous loci that harbor signatures of local adaptation, including genes involved in immunity, metabolism, olfactory and taste perception, reproduction, and wound healing. Within the Pygmy population, we identify multiple highly differentiated loci that play a role in growth and anterior pituitary function and are associated with height.

Indexed as

Genome, HumanPolymorphism, Single NucleotideBlack PeopleEvolution, MolecularGenetics, MedicalHigh-Throughput Nucleotide SequencingHuman ActivitiesHumansSequence Analysis, DNA

Identifiers

PMID22840920
PMCPMC3426505
OpenAlexW2065386938

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.