Evidence map›Paper›PMID 22840773›Full record

ArticleChemistry & biology2012

An unusual role for a mobile flavin in StaC-like indolocarbazole biosynthetic enzymes.

Peter J Goldman, Katherine S Ryan, Michael J Hamill, Annaleise R Howard-Jones, Christopher T Walsh, Sean J Elliott, Catherine L Drennan

Abstract read
In one paragraph

Article in Chemistry & biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
4.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Tetracycline-Inactivating Enzymes.Frontiers in microbiology · 2018
    Review
  5. Review
  6. Article
  7. One-carbon chemistry of oxalate oxidoreductase captured by X-ray crystallography.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Peter J GoldmanDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Katherine S Ryan
Michael J Hamill
Annaleise R Howard-Jones
Christopher T Walsh
Sean J Elliott
Catherine L Drennan
Boston University · USHarvard University · USMassachusetts Institute of Technology · USHoward Hughes Medical Institute · US

Funding

Y-FAMILY POLYMERASES AND CO-FACTORS IN TRANSLESION REPLICATIONP41RR015301 · NCRR · CORNELL UNIVERSITY ITHACA · PI EISENBERG, DAVID · 2001 to 2011
$28.2M
Modular Enzymatic Assembly Lines for AntibioticsR01GM020011 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI WALSH, CHRISTOPHER T · 1985 to 2013
$8.2M
5S RRNA RECOGNITION BY TRANSCRIPTION FACTOR IIIAF32GM020011 · NIGMS · SCRIPPS RESEARCH INSTITUTE · PI LEE, BRIAN M · 1999 to 2000
$39k
ENZYMATIC REACTION MECHANISMSR37GM020011 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI WALSH, CHRISTOPHER A · 1986 to 1995
–
Howard Hughes Medical InstituteNCRR NIH HHS P41 RR015301NIGMS NIH HHS F32 GM020011NIGMS NIH HHS GM 20011NIGMS NIH HHS R01 GM020011
6 · The paper itself

Abstract

The indolocarbazole biosynthetic enzymes StaC, InkE, RebC, and AtmC mediate the degree of oxidation of chromopyrrolic acid on route to the natural products staurosporine, K252a, rebeccamycin, and AT2433-A1, respectively. Here, we show that StaC and InkE, which mediate a net 4-electron oxidation, bind FAD with a micromolar K(d), whereas RebC and AtmC, which mediate a net 8-electron oxidation, bind FAD with a nanomolar K(d) while displaying the same FAD redox properties. We further create RebC-10x, a RebC protein with ten StaC-like amino acid substitutions outside of previously characterized FAD-binding motifs and the complementary StaC-10x. We find that these mutations mediate both FAD affinity and product specificity, with RebC-10x displaying higher StaC activity than StaC itself. X-ray structures of this StaC catalyst identify the substrate of StaC as 7-carboxy-K252c and suggest a unique mechanism for this FAD-dependent enzyme.

Indexed as

BiocatalysisCarbazolesFlavinsMixed Function OxygenasesModels, MolecularMolecular StructureCarbazolesFlavinsMixed Function Oxygenases

Identifiers

PMID22840773
PMCPMC3437190
OpenAlexW1964041375

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.