Evidence map›Paper›PMID 22839969›Full record

ArticleBiochemistry2012

Nucleotide release sequences in the protein kinase SRPK1 accelerate substrate phosphorylation.

Brandon E Aubol, Ryan M Plocinik, Maria L McGlone, Joseph A Adams

Abstract read
In one paragraph

Article in Biochemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Review
  3. Druggable Transient Pockets in Protein Kinases.Molecules (Basel, Switzerland) · 2021
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Brandon E AubolDepartment of Pharmacology, University of California, San Diego, La Jolla, CA 92093-0636, USA.
Ryan M Plocinik
Maria L McGlone
Joseph A Adams
University of California, San Diego · US

Funding

GRADUATE TRAINING IN CELLULAR &MOLECULAR PHARMACOLOGYT32GM007752 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BROWN, JOAN HELLER, HANDEL, TRACY M · 1985 to 2023
$13.5M
Role of protein phosphorylation in RNA splicingR01GM067969 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ADAMS, JOSEPH · 2004 to 2024
$6.4M
Clk Kinases and Splicing RegulationR01GM098528 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ADAMS, JOSEPH · 2012 to 2019
$2.5M
Mechanism of SR Protein Binding to the Splicing Kinase SRPK1F32GM090484 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PLOCINIK, RYAN MATTHEW · 2010 to 2011
$107k
NIGMS NIH HHS F32 GM090484NIGMS NIH HHS GM090484NIGMS NIH HHS GM098528NIGMS NIH HHS GM67969NIGMS NIH HHS R01 GM067969NIGMS NIH HHS R01 GM098528NIGMS NIH HHS T32 GM007752
6 · The paper itself

Abstract

Protein kinases are essential signaling enzymes that transfer phosphates from bound ATP to select amino acids in protein targets. For most kinases, the phosphoryl transfer step is highly efficient, while the rate-limiting step for substrate processing involves slow release of the product ADP. It is generally thought that structural factors intrinsic to the kinase domain and the nucleotide-binding pocket control this step and consequently the efficiency of protein phosphorylation for these cases. However, the kinase domains of protein kinases are commonly flanked by sequences that regulate catalytic function. To address whether such sequences could alter nucleotide exchange and, thus, regulate protein phosphorylation, the presence of activating residues external to the kinase domain was probed in the serine protein kinase SRPK1. Deletion analyses indicate that a small segment of a large spacer insert domain and a portion of an N-terminal extension function cooperatively to increase nucleotide exchange. The data point to a new mode of protein kinase regulation in which select sequences outside the kinase domain constitute a nucleotide release factor that likely interacts with the small lobe of the kinase domain and enhances protein substrate phosphorylation through increases in ADP dissociation rate.

Indexed as

Adenosine DiphosphateAmino Acid SequenceHumansNuclear ProteinsPhosphorylationProtein Serine-Threonine KinasesProtein Structure, TertiaryRNA-Binding ProteinsSequence DeletionSerine-Arginine Splicing FactorsAdenosine DiphosphateNuclear ProteinsProtein Serine-Threonine KinasesRNA-Binding ProteinsSerine-Arginine Splicing FactorsSRPK1 protein, human

Identifiers

PMID22839969
PMCPMC3718016
OpenAlexW2005761712

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.