Evidence map›Paper›PMID 22839733›Full record

ArticleACS chemical biology2012

2C-Methyl-d-erythritol 4-phosphate enhances and sustains cyclodiphosphate synthase IspF activity.

J Kipchirchir Bitok, Caren Freel Meyers

Abstract read
In one paragraph

Article in ACS chemical biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 41 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Positioning Bacillus subtilis as terpenoid cell factory.Journal of applied microbiology · 2021
    Review
  11. Diversifying Isoprenoid PlatformsFrontiers in microbiology · 2021
    Review
  12. Article
  13. Article
  14. Article
  15. EngineeredFrontiers in microbiology · 2019
    Article
  16. Review
  17. Engineering metabolic pathways inSynthetic and systems biotechnology · 2018
    Article
  18. Article
  19. Article
  20. Isoprenoid metabolism in apicomplexan parasites.Current clinical microbiology reports · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

J Kipchirchir BitokDepartment of Pharmacology and Molecular Sciences, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, United States.
Caren Freel Meyers
Johns Hopkins University · US

Funding

Targeting Non-mammalian Isoprenoid BiosynthesisR01GM084998 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI FREEL MEYERS, CAREN L. · 2010 to 2019
$3.0M
NIGMS NIH HHS GM084998NIGMS NIH HHS R01 GM084998
6 · The paper itself

Abstract

There is significant progress toward understanding catalysis throughout the essential MEP pathway to isoprenoids in human pathogens; however, little is known about pathway regulation. The present study begins by testing the hypothesis that isoprenoid biosynthesis is regulated via feedback inhibition of the fifth enzyme cyclodiphosphate synthase IspF by downstream isoprenoid diphosphates. Here, we demonstrate recombinant E. coli IspF is not inhibited by downstream metabolites isopentenyl diphosphate (IDP), dimethylallyl diphosphate (DMADP), geranyl diphosphate (GDP), and farnesyl diphosphate (FDP) under standard assay conditions. However, 2C-methyl-d-erythritol 4-phosphate (MEP), the product of reductoisomerase IspC and first committed MEP pathway intermediate, activates and sustains this enhanced IspF activity, and the IspF-MEP complex is inhibited by FDP. We further show that the methylerythritol scaffold itself, which is unique to this pathway, drives the activation and stabilization of active IspF. Our results suggest a novel feed-forward regulatory mechanism for 2C-methyl-d-erythritol 2,4-cyclodiphosphate (MEcDP) production and support an isoprenoid biosynthesis regulatory mechanism via feedback inhibition of the IspF-MEP complex by FDP. The results have important implications for development of inhibitors against the IspF-MEP complex, which may be the physiologically relevant form of the enzyme.

Indexed as

CatalysisEnzyme InhibitorsErythritolEscherichia coliEscherichia coli ProteinsGuanosine DiphosphateKineticsPhosphorus-Oxygen LyasesPolyisoprenyl PhosphatesSesquiterpenesSugar PhosphatesTerpenes2-C-methylerythritol 4-phosphateEnzyme InhibitorsErythritolEscherichia coli Proteinsfarnesyl pyrophosphateGuanosine DiphosphateISPF protein, E coliPhosphorus-Oxygen LyasesPolyisoprenyl PhosphatesSesquiterpenesSugar PhosphatesTerpenes

Identifiers

PMID22839733
PMCPMC3477264
OpenAlexW2089462004

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.