ArticleBMC plant biology2012
Global transcriptome analysis reveals distinct expression among duplicated genes during sorghum-interaction.
Article in BMC plant biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
31 citing papers in PubMed, 47 citations in OpenAlex.
- UV-induced reactive oxygen species and transcriptional control of 3-deoxyanthocyanidin biosynthesis in black sorghum pericarp.Frontiers in plant science · 2024Article
- Transcriptome Analysis Reveals Contrasting Plant Responses ofInternational journal of molecular sciences · 2022Article
- Article
- Comparative Transcriptome Analysis of Fungal PathogenFrontiers in microbiology · 2022Article
- Variation in Gene Expression between TwoPlants (Basel, Switzerland) · 2021Article
- Global mRNA and microRNA expression dynamics in response to anthracnose infection in sorghum.BMC genomics · 2020Article
- Prediction of Dhurrin Metabolism by Transcriptome and Metabolome Analyses inPlants (Basel, Switzerland) · 2020Article
- Article
- Sorghum 3-Deoxyanthocyanidin Flavonoids Confer Resistance against Corn Leaf Aphid.Journal of chemical ecology · 2019Article
- Transcriptome Profiling and Characterization of Drought-Tolerant Potato Plant (Molecules and cells · 2018Article
- Root lodging is a physical stress that changes gene expression from sucrose accumulation to degradation in sorghum.BMC plant biology · 2018Article
- The genome sequence of Bipolaris cookei reveals mechanisms of pathogenesis underlying target leaf spot of sorghum.Scientific reports · 2017Article
- Transcriptome profiling of developmental leaf senescence in sorghum (Sorghum bicolor).Plant molecular biology · 2016Article
- nana plant2 Encodes a Maize Ortholog of the Arabidopsis Brassinosteroid Biosynthesis Gene DWARF1, Identifying Developmental Interactions between Brassinosteroids and Gibberellins.Plant physiology · 2016Article
- Sorghum Dw1, an agronomically important gene for lodging resistance, encodes a novel protein involved in cell proliferation.Scientific reports · 2016Article
- The Sorghum Gene for Leaf Color Changes upon Wounding (P) Encodes a Flavanone 4-Reductase in the 3-Deoxyanthocyanidin Biosynthesis Pathway.G3 (Bethesda, Md.) · 2016Article
- The sorghum SWEET gene family: stem sucrose accumulation as revealed through transcriptome profiling.Biotechnology for biofuels · 2016Article
- Expression ofFrontiers in plant science · 2016Article
- Functional and expression analyses of transcripts based on full-length cDNAs of Sorghum bicolor.DNA research : an international journal for rapid publication of reports on genes and genomes · 2015Article
- Harnessing Next Generation Sequencing in Climate Change: RNA-Seq Analysis of Heat Stress-Responsive Genes in Wheat (Triticum aestivum L.).Omics : a journal of integrative biology · 2015Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
8 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundSorghum (Sorghum bicolor L. Moench) is a rich source of natural phytochemicals. We performed massive parallel sequencing of mRNA to identify differentially expressed genes after sorghum BTx623 had been infected with Bipolaris sorghicola, a necrotrophic fungus causing a sorghum disease called target leaf spot.
resultSeventy-six-base-pair reads from mRNAs of mock- or pathogen-infected leaves were sequenced. Unannotated transcripts were predicted on the basis of the piling-up of mapped short reads. Differentially expressed genes were identified statistically; particular genes in tandemly duplicated putative paralogs were highly upregulated. Pathogen infection activated the glyoxylate shunt in the TCA cycle; this changes the role of the TCA cycle from energy production to synthesis of cell components. The secondary metabolic pathways of phytoalexin synthesis and of sulfur-dependent detoxification were activated by upregulation of the genes encoding amino acid metabolizing enzymes located at the branch point between primary and secondary metabolism. Coordinated gene expression could guide the metabolic pathway for accumulation of the sorghum-specific phytochemicals 3-deoxyanthocyanidin and dhurrin. Key enzymes for synthesizing these sorghum-specific phytochemicals were not found in the corresponding region of the rice genome.
conclusionPathogen infection dramatically changed the expression of particular paralogs that putatively encode enzymes involved in the sorghum-specific metabolic network.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.