Evidence map›Paper›PMID 22837378›Full record

SynthesisAmerican journal of respiratory and critical care medicine2012

Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.

Jemma B Wilk, Nick R G Shrine, Laura R Loehr, Jing Hua Zhao, Ani Manichaikul, Lorna M Lopez, Albert Vernon Smith, Susan R Heckbert, Joanna Smolonska, Wenbo Tang and 69 more

Open access · greenAbstract readMeta-Analysis
In one paragraph

Synthesis in American journal of respiratory and critical care medicine, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 112 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
112citing papers in PubMed, 5 pooled it
14.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

112 citing papers in PubMed, 5 syntheses or guidelines pooled it, 175 citations in OpenAlex.

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52 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

79 authors at 20 institutions in 10 countries.

Jemma B WilkDivision of Aging, Brigham and Women's Hospital and Harvard Medical School, 1620 Tremont Street, Boston, MA 02120, USA. jwilk@rics.bwh.harvard.edu
Nick R G Shrine
Laura R Loehr
Jing Hua Zhao
Ani Manichaikul
Lorna M Lopez
Albert Vernon Smith
Susan R Heckbert
Joanna Smolonska
Wenbo Tang
Daan W Loth
Ivan Curjuric
Jennie Hui
Michael H Cho
Jeanne C Latourelle
Amanda P Henry
Melinda Aldrich
Per Bakke
Terri H Beaty
Amy R Bentley
Ingrid B Borecki
Guy G Brusselle
Kristin M Burkart
Ting-hsu Chen
David Couper
James D Crapo
Gail Davies
Josée Dupuis
Nora Franceschini
Amund Gulsvik
Dana B Hancock
Tamara B Harris
Albert Hofman
Medea Imboden
Alan L James
Kay-Tee Khaw
Lies Lahousse
Lenore J Launer
Augusto Litonjua
Yongmei Liu
Kurt K Lohman
David A Lomas
Thomas Lumley
Kristin D Marciante
Wendy L McArdle
Bernd Meibohm
Alanna C Morrison
Arthur W Musk
Richard H Myers
Kari E North
Dirkje S Postma
Bruce M Psaty
Stephen S Rich
Fernando Rivadeneira
Thierry Rochat
Jerome I Rotter
María Soler Artigas
John M Starr
André G Uitterlinden
Nicholas J Wareham
Cisca Wijmenga
Pieter Zanen
Michael A Province
Edwin K Silverman
Ian J Deary
Lyle J Palmer
Patricia A Cassano
Vilmundur Gudnason
R Graham Barr
Ruth J F Loos
David P Strachan
Stephanie J London
H Marike Boezen
Nicole Probst-Hensch
Sina A Gharib
Ian P Hall
George T O'Connor
Martin D Tobin
Bruno H Stricker
The University of Western Australia · AUBoston University · USUniversity Medical Center Groningen · NLUniversity of Edinburgh · GBUniversity of Iceland · ISUniversity of North Carolina at Chapel Hill · USUniversity of Virginia · USAddenbrooke's Hospital · GBErasmus MC · NLNational Institutes of Health · USSir Charles Gairdner Hospital · AUUniversity of Leicester · GBUniversity of Nottingham · GBBrigham and Women's Hospital · USNational Jewish Health · USNetherlands Consortium for Healthy Ageing · NLUniversity of Auckland · NZUniversity of Basel · CHUniversity of Tennessee Health Science Center · USAlzheimer Scotland · GB

Funding

Institute for Clinical and Translational Research (UL1)UL1RR025005 · NCRR · JOHNS HOPKINS UNIVERSITY · PI FORD, DANIEL ERNEST · 2007 to 2011
$75.8M
Type 1 Diabetes Genetics ConsortiumU01DK062418 · NIDDK · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI RICH, STEPHEN S. · 2002 to 2007
$59.8M
UCLA Clinical and Translational Science InstituteUL1TR000124 · NCATS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DUBINETT, STEVEN M. · 2012 to 2015
$57.0M
Genetic Epidemiology of COPDU01HL089897 · NHLBI · NATIONAL JEWISH HEALTH · PI CRAPO, JAMES D · 2007 to 2021
$56.9M
CTSA INFRASTRUCTURE FOR PEDIATRIC RESEARCHUL1RR024156 · NCRR · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GINSBERG, HENRY N · 2006 to 2011
$53.0M
Transgenic & Knock-out MouseP30DK063491 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MILES Frome WILKINSON · 2003 to 2026
$40.4M
UNC-CH CENTER FOR ENVIRONMENTAL HEALTH &SUSCEPTIBILITYP30ES010126 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Hazel B Nichols · 2001 to 2026
$36.3M
Metabolomic signatures of empysema and COPD progression in the COPDGene cohortR01HL089897 · NHLBI · NATIONAL JEWISH HEALTH · PI CRAPO, JAMES D · 2012 to 2016
$31.1M
Genome-Wide Association Analysis in Essential Hypertension (FEHGAS study)R01HL086694 · NHLBI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ARAVINDA CHAKRAVARTI · 2007 to 2026
$21.2M
Genetic Epidemiology of COPDU01HL089856 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI SILVERMAN, EDWIN K · 2007 to 2021
$20.7M
(2 of 2) Genetic Epidemiology of COPDR01HL089856 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI SILVERMAN, EDWIN K · 2012 to 2016
$18.9M
Pulmonary microvascular perfusion in the Multi-Ethnic Study of AtherosclerosisR01HL077612 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI R Graham BARR · 2004 to 2026
$18.8M
Biotechnology and Biological Sciences Research Council BB/F019394/1Intramural NIH HHS Z01 ES043012Medical Research Council G0000934Medical Research Council G0401527Medical Research Council G0700704Medical Research Council G0901786Medical Research Council G0902313Medical Research Council G1000143Medical Research Council G1000861Medical Research Council MC_U106179471NCATS NIH HHS UL1 TR000124NCRR NIH HHS RR-024156NCRR NIH HHS UL1 RR024156NCRR NIH HHS UL1 RR025005NCRR NIH HHS UL1 RR033176NCRR NIH HHS UL 1RR033176NHGRI NIH HHS HHSN268200782096CNHGRI NIH HHS U01 HG004402NHGRI NIH HHS U01HG004402NHLBI NIH HHS HHSN268201100005CNHLBI NIH HHS HHSN268201100005GNHLBI NIH HHS HHSN268201100005INHLBI NIH HHS HHSN268201100006CNHLBI NIH HHS HHSN268201100007CNHLBI NIH HHS HHSN268201100007INHLBI NIH HHS HHSN268201100008CNHLBI NIH HHS HHSN268201100008INHLBI NIH HHS HHSN268201100009CNHLBI NIH HHS HHSN268201100009INHLBI NIH HHS HHSN268201100010CNHLBI NIH HHS HHSN268201100011CNHLBI NIH HHS HHSN268201100011INHLBI NIH HHS HHSN268201100012CNHLBI NIH HHS HL075366NHLBI NIH HHS HL080295NHLBI NIH HHS HL087652NHLBI NIH HHS HL105756NHLBI NIH HHS K08 HL097029NHLBI NIH HHS K12 HL089990NHLBI NIH HHS K12HL089990NHLBI NIH HHS N01 HC015103NHLBI NIH HHS N01 HC025195NHLBI NIH HHS N01 HC035129NHLBI NIH HHS N01 HC045133NHLBI NIH HHS N01 HC055222NHLBI NIH HHS N01 HC075150NHLBI NIH HHS N01 HC085079NHLBI NIH HHS N01 HC085086NHLBI NIH HHS N01 HC095159NHLBI NIH HHS N01 HC095169NHLBI NIH HHS N01-HC-25195NHLBI NIH HHS N01 HC-55222NHLBI NIH HHS N01-HC-75150NHLBI NIH HHS N01 HC 85079NHLBI NIH HHS N01-HC-85086NHLBI NIH HHS N01-HC-85239NHLBI NIH HHS N01-HC-95159NHLBI NIH HHS N01-HC-95160NHLBI NIH HHS N01-HC-95161NHLBI NIH HHS N01-HC-95162NHLBI NIH HHS N01-HC-95163NHLBI NIH HHS N01-HC-95164NHLBI NIH HHS N01-HC-95165NHLBI NIH HHS N01-HC-95166NHLBI NIH HHS N01-HC-95167NHLBI NIH HHS N01-HC-95168NHLBI NIH HHS N01-HC-95169NHLBI NIH HHS N01 HR076101NHLBI NIH HHS N01 HR076102NHLBI NIH HHS N01 HR076103NHLBI NIH HHS N01 HR076104NHLBI NIH HHS N01 HR076105NHLBI NIH HHS N01 HR076106NHLBI NIH HHS N01 HR076107NHLBI NIH HHS N01 HR076108NHLBI NIH HHS N01 HR076109NHLBI NIH HHS N01 HR076110NHLBI NIH HHS N01 HR076111NHLBI NIH HHS N01 HR076112NHLBI NIH HHS N01 HR076113NHLBI NIH HHS N01 HR076114NHLBI NIH HHS N01 HR076115NHLBI NIH HHS N01 HR076116NHLBI NIH HHS N01 HR076118NHLBI NIH HHS N01 HR076119NHLBI NIH HHS N01HR76117NHLBI NIH HHS N02-HL-64278NHLBI NIH HHS P01 HL083069NHLBI NIH HHS R01 HL059367NHLBI NIH HHS R01 HL075366NHLBI NIH HHS R01 HL075476NHLBI NIH HHS R01 HL075478NHLBI NIH HHS R01 HL077612NHLBI NIH HHS R01 HL080295NHLBI NIH HHS R01 HL084323NHLBI NIH HHS R01 HL086694NHLBI NIH HHS R01HL086694NHLBI NIH HHS R01 HL087641NHLBI NIH HHS R01HL087641NHLBI NIH HHS R01 HL087652NHLBI NIH HHS R01 HL087700NHLBI NIH HHS R01-HL-087700NHLBI NIH HHS R01 HL088215NHLBI NIH HHS R01-HL-088215NHLBI NIH HHS R01 HL089856NHLBI NIH HHS R01 HL089897NHLBI NIH HHS R01 HL105756NHLBI NIH HHS R01HL59367NHLBI NIH HHS RC1 HL100543NHLBI NIH HHS RC1-HL100543NHLBI NIH HHS U01 HL080295NHLBI NIH HHS U01 HL089856NHLBI NIH HHS U01 HL089897NIA NIH HHS 1R01AG032098-01A1NIA NIH HHS AG 023629NIA NIH HHS AG-027058NIA NIH HHS AG-20098NIA NIH HHS N01 AG012100NIA NIH HHS N01 AG062101NIA NIH HHS N01 AG062106NIA NIH HHS N01AG2103NIA NIH HHS R01 AG015928NIA NIH HHS R01 AG020098NIA NIH HHS R01 AG023629NIA NIH HHS R01 AG027058NIA NIH HHS R01 AG032098NIA NIH HHS R56 AG020098NIA NIH HHS R56 AG023629NIA NIH HHS RC1 AG035835NIA NIH HHS RC1AG035835NIDDK NIH HHS DK063491NIDDK NIH HHS P30 DK063491NIDDK NIH HHS R01 DK-075681NIDDK NIH HHS R01 DK075681NIDDK NIH HHS R01-DK-8925601NIDDK NIH HHS U01 DK062418NIEHS NIH HHS P30 ES010126NIEHS NIH HHS R25 ES011080NIEHS NIH HHS Z01ES043012NIEHS NIH HHS ZO1 ES43012Wellcome TrustWellcome Trust 018996Wellcome Trust 068545/Z/02Wellcome Trust 076113/B/04/ZWellcome Trust WT 084703MA
6 · The paper itself

Abstract

rationaleGenome-wide association studies (GWAS) have identified loci influencing lung function, but fewer genes influencing chronic obstructive pulmonary disease (COPD) are known.

objectivesPerform meta-analyses of GWAS for airflow obstruction, a key pathophysiologic characteristic of COPD assessed by spirometry, in population-based cohorts examining all participants, ever smokers, never smokers, asthma-free participants, and more severe cases.

methodsFifteen cohorts were studied for discovery (3,368 affected; 29,507 unaffected), and a population-based family study and a meta-analysis of case-control studies were used for replication and regional follow-up (3,837 cases; 4,479 control subjects). Airflow obstruction was defined as FEV(1) and its ratio to FVC (FEV(1)/FVC) both less than their respective lower limits of normal as determined by published reference equations. MEASUREMENTS AND MAIN

resultsThe discovery meta-analyses identified one region on chromosome 15q25.1 meeting genome-wide significance in ever smokers that includes AGPHD1, IREB2, and CHRNA5/CHRNA3 genes. The region was also modestly associated among never smokers. Gene expression studies confirmed the presence of CHRNA5/3 in lung, airway smooth muscle, and bronchial epithelial cells. A single-nucleotide polymorphism in HTR4, a gene previously related to FEV(1)/FVC, achieved genome-wide statistical significance in combined meta-analysis. Top single-nucleotide polymorphisms in ADAM19, RARB, PPAP2B, and ADAMTS19 were nominally replicated in the COPD meta-analysis.

conclusionsThese results suggest an important role for the CHRNA5/3 region as a genetic risk factor for airflow obstruction that may be independent of smoking and implicate the HTR4 gene in the etiology of airflow obstruction.

Indexed as

Genome-Wide Association StudyAgedFemaleForced Expiratory VolumeHumansMaleMiddle AgedNerve Tissue ProteinsPolymorphism, Single NucleotidePulmonary Disease, Chronic ObstructiveReceptors, NicotinicReceptors, Serotonin, 5-HT4SmokingVital CapacityCHRNA5 protein, humanNerve Tissue ProteinsReceptors, NicotinicReceptors, Serotonin, 5-HT4

Identifiers

PMID22837378
PMCPMC3480517
OpenAlexW2168850818

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.