Evidence map›Paper›PMID 22837215›Full record

ArticleJournal of virology2012

Eastern chimpanzees, but not bonobos, represent a simian immunodeficiency virus reservoir.

Yingying Li, Jean-Bosco Ndjango, Gerald H Learn, Miguel A Ramirez, Brandon F Keele, Frederic Bibollet-Ruche, Weimin Liu, Juliet L Easlick, Julie M Decker, Rebecca S Rudicell and 13 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 87 citations in OpenAlex.

  1. Trial
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  3. Review
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  6. Article
  7. Local genetic adaptation to habitat in wild chimpanzees.bioRxiv : the preprint server for biology · 2024
    Article
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  14. Review
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  16. CD4 receptor diversity represents an ancient protection mechanism against primate lentiviruses.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  17. Review
  18. Article
  19. The HLA A03 Supertype and SeveralJournal of virology · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 14 institutions in 8 countries.

Yingying LiDepartment of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Jean-Bosco Ndjango
Gerald H Learn
Miguel A Ramirez
Brandon F Keele
Frederic Bibollet-Ruche
Weimin Liu
Juliet L Easlick
Julie M Decker
Rebecca S Rudicell
Bila-Isia Inogwabini
Steve Ahuka-Mundeke
Fabian H Leendertz
Vernon Reynolds
Martin N Muller
Rebecca L Chancellor
Aaron S Rundus
Nicole Simmons
Michael Worobey
George M Shaw
Martine Peeters
Paul M Sharp
Beatrice H Hahn
University of Pennsylvania · USUniversity of Alabama at Birmingham · USInternational Gorilla Conservation Programme · RWInstitut de Recherche pour le Développement · FRMakerere University · UGNational Cancer Institute · USRobert Koch Institute · DESwedish University of Agricultural Sciences · SEUniversité de Kisangani · CDUniversité de Montpellier · FRUniversity of Arizona · USUniversity of Edinburgh · GBUniversity of New Mexico · USUniversity of Oxford · GB

Funding

Virology CoreP30AI027767 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI OLAF KUTSCH · 1988 to 2026
$84.1M
Natural SIV Reservoirs and Human Zoonotic RiskR01AI050529 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HAHN, BEATRICE H · 2001 to 2022
$6.1M
Molecular Epidemiology and Natural History of SIVcpzR01AI058715 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HAHN, BEATRICE H · 2004 to 2013
$6.1M
Howard Hughes Medical InstituteNIAID NIH HHS P30 AI027767NIAID NIH HHS P30 AI 27767NIAID NIH HHS R01 AI050529NIAID NIH HHS R01 AI058715NIAID NIH HHS R01 AI50529NIAID NIH HHS R01 AI58715
6 · The paper itself

Abstract

Chimpanzees in west central Africa (Pan troglodytes troglodytes) are endemically infected with simian immunodeficiency viruses (SIVcpzPtt) that have crossed the species barrier to humans and gorillas on at least five occasions, generating pandemic and nonpandemic forms of human immunodeficiency virus type 1 (HIV-1) as well as gorilla SIV (SIVgor). Chimpanzees in east Africa (Pan troglodytes schweinfurthii) are also infected with SIVcpz; however, their viruses (SIVcpzPts) have never been found in humans. To examine whether this is due to a paucity of natural infections, we used noninvasive methods to screen wild-living eastern chimpanzees in the Democratic Republic of the Congo (DRC), Uganda, and Rwanda. We also screened bonobos (Pan paniscus) in the DRC, a species not previously tested for SIV in the wild. Fecal samples (n = 3,108) were collected at 50 field sites, tested for species and subspecies origin, and screened for SIVcpz antibodies and nucleic acids. Of 2,565 samples from eastern chimpanzees, 323 were antibody positive and 92 contained viral RNA. The antibody-positive samples represented 76 individuals from 19 field sites, all sampled north of the Congo River in an area spanning 250,000 km(2). In this region, SIVcpzPts was common and widespread, with seven field sites exhibiting infection rates of 30% or greater. The overall prevalence of SIVcpzPts infection was 13.4% (95% confidence interval, 10.7% to 16.5%). In contrast, none of the 543 bonobo samples from six sites was antibody positive. All newly identified SIVcpzPts strains clustered in strict accordance to their subspecies origin; however, they exhibited considerable genetic diversity, especially in protein domains known to be under strong host selection pressure. Thus, the absence of SIVcpzPts zoonoses cannot be explained by an insufficient primate reservoir. Instead, greater adaptive hurdles may have prevented the successful colonization of humans by P. t. schweinfurthii viruses.

Indexed as

Amino Acid SequenceAnimalsAntibodiesCD4-Positive T-LymphocytesDemocratic Republic of the CongoFemaleGenetic VariationGenomeGeographyHumansLikelihood FunctionsMaleMolecular Sequence DataPan paniscusPan troglodytesPhylogenyAntibodies

Identifiers

PMID22837215
PMCPMC3457319
OpenAlexW2144720155

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.