Evidence map›Paper›PMID 22837206›Full record

ArticleJournal of virology2012

The attenuated genotype of varicella-zoster virus includes an ORF0 transitional stop codon mutation.

Geoffrey A Peters, Shaun D Tyler, John E Carpenter, Wallen Jackson, Yasuko Mori, Ann M Arvin, Charles Grose

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 1 pooled it
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 1 synthesis or guideline pooled it, 53 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Cancer viroimmunotherapy platforms based on varicella-zoster virus and cytomegalovirus.Molecular therapy : the journal of the American Society of Gene Therapy · 2026
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  15. Alphaherpesvirus Vaccines.Current issues in molecular biology · 2021
    Review
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 3 countries.

Geoffrey A PetersNational Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, Manitoba, Canada.
Shaun D Tyler
John E Carpenter
Wallen Jackson
Yasuko Mori
Ann M Arvin
Charles Grose
Boston Children's Hospital · USPublic Health Agency of Canada · CAKobe University · JPStanford University · USUniversity of Iowa Stead Family Children’s Hospital · US

Funding

Varicella-zoster Virus: Tegument Proteins in PathogenesisR01AI053846 · NIAID · STANFORD UNIVERSITY · PI ARVIN, ANN · 2003 to 2012
$4.1M
Autophagy and ER stress during varicella infectionR01AI089716 · NIAID · UNIVERSITY OF IOWA · PI GROSE, CHARLES F. · 2011 to 2015
$1.9M
NIAID NIH HHS AI53846NIAID NIH HHS AI89716NIAID NIH HHS R01 AI053846NIAID NIH HHS R01 AI089716
6 · The paper itself

Abstract

Varicella-zoster virus (VZV) is the first of the human herpesviruses to be attenuated and subsequently approved as a live vaccine to prevent varicella and herpes zoster. Both the attenuated VZV vaccine, called vaccine Oka or vOka, and the parental strain pOka have been completely sequenced. Yet the specific determinants of attenuation are uncertain. The open reading frame (ORF) with the most single nucleotide polymorphisms (SNPs), ORF62, encodes the regulatory protein IE62, but IE62 studies have failed to define a specific SNP associated with attenuation. We have completed next-generation sequencing of the VZV Ellen genome, a strain known to be highly attenuated by its very limited replication in human skin xenografts in the SCID mouse model of VZV pathogenesis. A comparative analysis of the Ellen sequence with all other complete VZV sequences was extremely informative. In particular, an unexpected finding was a stop codon mutation in Ellen ORF0 (herpes simplex virus UL56 homolog) identical to one found in vOka, combined with the absence of polymorphisms in most Ellen ORFs that were known to be mutated in vOka. The mutated ORF0 protein was also imaged in both two dimensions and three dimensions by confocal microscopy. The probability of two VZV strains not connected by a recent common ancestor having an identical ORF0 SNP by chance would be 1 × 10(-8), in other words, extremely unlikely. Taken together, these bioinformatics analyses strongly suggest that the stop codon ORF0 SNP is one of the determinants of the attenuation genotype of live VZV vaccines.

Indexed as

Codon, TerminatorMutationOpen Reading FramesAnimalsComputational BiologyFibroblastsGenome, ViralGenotypeHerpesvirus 3, HumanHumansImmediate-Early ProteinsImmunoprecipitationMiceMice, SCIDMicroscopy, ConfocalMolecular Sequence DataCodon, TerminatorIE62 protein, Human herpesvirus 3Immediate-Early ProteinsTrans-ActivatorsVaccines, AttenuatedViral Envelope Proteins

Identifiers

PMID22837206
PMCPMC3457260
OpenAlexW2099464605

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.