Evidence map›Paper›PMID 22836354›Full record

ArticleRNA (New York, N.Y.)2012

Multiple binding of repressed mRNAs by the P-body protein Rck/p54.

Michèle Ernoult-Lange, Sonia Baconnais, Maryannick Harper, Nicola Minshall, Sylvie Souquere, Thomas Boudier, Marianne Bénard, Philippe Andrey, Gérard Pierron, Michel Kress and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 87 citations in OpenAlex.

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3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Michèle Ernoult-LangeUPMC Univ Paris 06, CNRS-FRE 3402, 75252 Paris cedex 5, France.
Sonia Baconnais
Maryannick Harper
Nicola Minshall
Sylvie Souquere
Thomas Boudier
Marianne Bénard
Philippe Andrey
Gérard Pierron
Michel Kress
Nancy Standart
Eric le Cam
Dominique Weil
Centre National de la Recherche Scientifique · FRUniversity of Cambridge · GBAgroParisTech · FRInstitut de Biologie Intégrative de la Cellule · FR

Funding

Biotechnology and Biological Sciences Research Council BB/C514766/1
6 · The paper itself

Abstract

Translational repression is achieved by protein complexes that typically bind 3' UTR mRNA motifs and interfere with the formation of the cap-dependent initiation complex, resulting in mRNPs with a closed-loop conformation. We demonstrate here that the human DEAD-box protein Rck/p54, which is a component of such complexes and central to P-body assembly, is in considerable molecular excess with respect to cellular mRNAs and enriched to a concentration of 0.5 mM in P-bodies, where it is organized in clusters. Accordingly, multiple binding of p54 proteins along mRNA molecules was detected in vivo. Consistently, the purified protein bound RNA with no sequence specificity and high nanomolar affinity. Moreover, bound RNA molecules had a relaxed conformation. While RNA binding was ATP independent, relaxing of bound RNA was dependent on ATP, though not on its hydrolysis. We propose that Rck/p54 recruitment by sequence-specific translational repressors leads to further binding of Rck/p54 along mRNA molecules, resulting in their masking, unwinding, and ultimately recruitment to P-bodies. Rck/p54 proteins located at the 5' extremity of mRNA can then recruit the decapping complex, thus coupling translational repression and mRNA degradation.

Indexed as

Adenosine TriphosphateDEAD-box RNA HelicasesHeLa CellsHumansModels, BiologicalProtein BindingProtein Interaction Domains and MotifsProtein MultimerizationProto-Oncogene ProteinsRNA, MessengerAdenosine TriphosphateDDX6 protein, humanDEAD-box RNA HelicasesProto-Oncogene ProteinsRNA, Messenger

Identifiers

PMID22836354
PMCPMC3425784
OpenAlexW2170936476

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.