Evidence map›Paper›PMID 22836128›Full record

ArticleMethods (San Diego, Calif.)2012

ORF phage display to identify cellular proteins with different functions.

Wei Li

Abstract read
In one paragraph

Article in Methods (San Diego, Calif.), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
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  9. Article
  10. Interaction analysis through proteomic phage display.BioMed research international · 2014
    Review
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author at 1 institution in 1 country.

Wei LiBascom Palmer Eye Institute, Department of Ophthalmology, University of Miami School of Medicine, 1638 NW 10th Avenue, Miami, FL 33136, USA. wli@med.miami.edu
University of Miami · US

Funding

PROFILING AUTOANTIGENS IN UVEITISR01EY016211 · NEI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI LI, WEI · 2005 to 2010
$1.8M
Elucidation of Tubby and Tulp 1 Mechanisms by Comparitive Functional ProteomicsR01GM094449 · NIGMS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI LI, WEI · 2011 to 2014
$1.1M
NEI NIH HHS R01 EY016211NEI NIH HHS R01EY016211-05S1NIGMS NIH HHS R01 GM094449NIGMS NIH HHS R01GM094449-01A1
6 · The paper itself

Abstract

Open reading frame (ORF) phage display is a new branch of phage display aimed at improving its efficiency to identify cellular proteins with specific binding or functional activities. Despite the success of phage display with antibody libraries and random peptide libraries, phage display with cDNA libraries of cellular proteins identifies a high percentage of non-ORF clones encoding unnatural short peptides with minimal biological implications. This is mainly because of the uncontrollable reading frames of cellular proteins in conventional cDNA libraries. ORF phage display solves this problem by eliminating non-ORF clones to generate ORF cDNA libraries. Here I summarize the procedures of ORF phage display, discuss the factors influencing its efficiency, present examples of its versatile applications, and highlight evidence of its capability of identifying biologically relevant cellular proteins. ORF phage display coupled with different selection strategies is capable of delineating diverse functions of cellular proteins with unique advantages.

Indexed as

Cell Surface Display TechniquesOpen Reading FramesPeptide LibraryAutoantigensBacteriophagesCells, CulturedCloning, MolecularDNA, ComplementaryGene LibraryGenetic VectorsHumansPeptide HydrolasesPhagocytosisProtein Interaction MappingProteolysisProteomeAutoantigensDNA, ComplementaryPeptide HydrolasesPeptide LibraryProteome

Identifiers

PMID22836128
PMCPMC3491178
OpenAlexW2030870223

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.