Evidence map›Paper›PMID 22833609›Full record

ArticleNucleic acids research2012

Sequencing of the smallest Apicomplexan genome from the human pathogen Babesia microti.

Emmanuel Cornillot, Kamel Hadj-Kaddour, Amina Dassouli, Benjamin Noel, Vincent Ranwez, Benoît Vacherie, Yoann Augagneur, Virginie Brès, Aurelie Duclos, Sylvie Randazzo and 16 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 142 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
142citing papers in PubMed, 2 pooled it
7.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

142 citing papers in PubMed, 2 syntheses or guidelines pooled it, 213 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Coinfection ecology and pathogen emergence in aApplied and environmental microbiology · 2026
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  10. More than malaria: ExploringCurrent research in parasitology & vector-borne diseases · 2026
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  11. Coinfection Ecology and Pathogen Emergence in amedRxiv : the preprint server for health sciences · 2025
    Article
  12. Article
  13. Review
  14. Article
  15. Application of Multiplatform Mass Spectrometry to the Study ofInternational journal of molecular sciences · 2025
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

82 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 10 institutions in 3 countries.

Emmanuel CornillotLaboratoire de Biologie Cellulaire et Moléculaire (LBCM-EA4558), UFR Pharmacie, Université Montpellier 1, 15, av. Charles Flahault, 34093 Montpellier cedex 5, France. emmanuel.cornillot@univ-montp1.fr
Kamel Hadj-Kaddour
Amina Dassouli
Benjamin Noel
Vincent Ranwez
Benoît Vacherie
Yoann Augagneur
Virginie Brès
Aurelie Duclos
Sylvie Randazzo
Bernard Carcy
Françoise Debierre-Grockiego
Stéphane Delbecq
Karina Moubri-Ménage
Hosam Shams-Eldin
Sahar Usmani-Brown
Frédéric Bringaud
Patrick Wincker
Christian P Vivarès
Ralph T Schwarz
Theo P Schetters
Peter J Krause
André Gorenflot
Vincent Berry
Valérie Barbe
Choukri Ben Mamoun
Université Clermont Auvergne · FRYale University · USGenoscope · FRCentre National de la Recherche Scientifique · FRGénomique Métabolique du Genoscope · FRPhilipps University of Marburg · DECentre de Résonance Magnétique des Systèmes Biologiques · FRDépartement Santé Animale · FRInfectiologie et Santé Publique · FRLaboratory of Pathogens and Host Immunity · FR

Funding

NIAID NIH HHS AI007603NIAID NIH HHS T15 AI007603
6 · The paper itself

Abstract

We have sequenced the genome of the emerging human pathogen Babesia microti and compared it with that of other protozoa. B. microti has the smallest nuclear genome among all Apicomplexan parasites sequenced to date with three chromosomes encoding ∼3500 polypeptides, several of which are species specific. Genome-wide phylogenetic analyses indicate that B. microti is significantly distant from all species of Babesidae and Theileridae and defines a new clade in the phylum Apicomplexa. Furthermore, unlike all other Apicomplexa, its mitochondrial genome is circular. Genome-scale reconstruction of functional networks revealed that B. microti has the minimal metabolic requirement for intraerythrocytic protozoan parasitism. B. microti multigene families differ from those of other protozoa in both the copy number and organization. Two lateral transfer events with significant metabolic implications occurred during the evolution of this parasite. The genomic sequencing of B. microti identified several targets suitable for the development of diagnostic assays and novel therapies for human babesiosis.

Indexed as

Genome, ProtozoanBabesia microtiGlycosylphosphatidylinositolsProteomeSequence Analysis, DNAGlycosylphosphatidylinositolsProteome

Identifiers

PMID22833609
PMCPMC3467087
OpenAlexW2137510730

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.