Evidence map›Paper›PMID 22832964›Full record

SynthesisTranslational psychiatry2012

Genome-wide meta-analyses of smoking behaviors in African Americans.

S P David, A Hamidovic, G K Chen, A W Bergen, J Wessel, J L Kasberger, W M Brown, S Petruzella, E L Thacker, Y Kim and 69 more

Open access · goldAbstract readMeta-Analysis
In one paragraph

Synthesis in Translational psychiatry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers, 7 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed, 7 pooled it
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 7 syntheses or guidelines pooled it, 102 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Pooled it
  6. Pooled it
  7. Pooled it
  8. Trial
  9. Trial
  10. Trial
  11. Review
  12. Article
  13. Article
  14. Article
  15. Multiethnic Prediction of Nicotine Biomarkers and Association With Nicotine Dependence.Nicotine & tobacco research : official journal of the Society for Research on Nicotine and Tobacco · 2021
    Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article

9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

79 authors at 20 institutions in 1 country.

S P DavidCenter for Health Sciences, Policy Division, SRI International, Menlo Park, CA, USA. spdavid@stanford.edu
A Hamidovic
G K Chen
A W Bergen
J Wessel
J L Kasberger
W M Brown
S Petruzella
E L Thacker
Y Kim
M A Nalls
G J Tranah
Y J Sung
C B Ambrosone
D Arnett
E V Bandera
D M Becker
L Becker
S I Berndt
L Bernstein
W J Blot
U Broeckel
S G Buxbaum
N Caporaso
G Casey
S J Chanock
S L Deming
W R Diver
C B Eaton
D S Evans
M K Evans
M Fornage
N Franceschini
T B Harris
B E Henderson
D G Hernandez
B Hitsman
J J Hu
S C Hunt
S A Ingles
E M John
R Kittles
S Kolb
L N Kolonel
L Le Marchand
Y Liu
K K Lohman
B McKnight
R C Millikan
A Murphy
C Neslund-Dudas
S Nyante
M Press
B M Psaty
D C Rao
S Redline
J L Rodriguez-Gil
B A Rybicki
L B Signorello
A B Singleton
J Smoller
B Snively
B Spring
J L Stanford
S S Strom
G E Swan
K D Taylor
M J Thun
A F Wilson
J S Witte
Y Yamamura
L R Yanek
K Yu
W Zheng
R G Ziegler
A B Zonderman
E Jorgenson
C A Haiman
H Furberg
National Institutes of Health · USUniversity of Southern California · USNorthwestern University · USSRI International · USWake Forest University · USNational Cancer Institute · USUniversity of North Carolina at Chapel Hill · USAmerican Cancer Society · USCalifornia Pacific Medical Center · USCancer Center of Hawaii · USFred Hutch Cancer Center · USHenry Ford Hospital · USInternational Epidemiology Institute · USJohns Hopkins University · USMemorial Sloan Kettering Cancer Center · USNational Institute on Aging · USThe University of Texas MD Anderson Cancer Center · USUniversity of California, San Francisco · USUniversity of Washington · USVanderbilt University · US

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Eric Collisson · 1985 to 2026
$296.4M
Southern Community Cohort StudyR01CA092447 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI BLOT, WILLIAM J., ZHENG, WEI · 2001 to 2015
$74.0M
Healthy Aging In Neighborhoods of Diversity Across the Life Span (HANDLS)ZIAAG000513 · NIA · NATIONAL INSTITUTE ON AGING · PI EVANS, MICHELE K · 2009 to 2025
$70.9M
Tissue Procurement & PathologyP50CA058223 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BENJAMIN CARLISLE CALHOUN · 1992 to 2026
$59.3M
UCLA Clinical and Translational Science InstituteUL1TR000124 · NCATS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DUBINETT, STEVEN M. · 2012 to 2015
$57.0M
UNC-CH CENTER FOR ENVIRONMENTAL HEALTH &SUSCEPTIBILITYP30ES010126 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Hazel B Nichols · 2001 to 2026
$36.3M
MULTIDISCIPLINARY CLINICAL AND TRANSLATIONAL SCIENCE (MCTS) PROGRAM (UL1)UL1RR025741 · NCRR · NORTHWESTERN UNIVERSITY AT CHICAGO · PI GREENLAND, PHILIP · 2008 to 2011
$24.7M
University of Toronto Coordinating Genetics Core & Clinical Trial SiteU01DA020830 · NIDA · UNIVERSITY OF PENNSYLVANIA · PI LERMAN, CARYN · 2005 to 2014
$22.4M
Genometric analysis of quantitative traitsZIAHG000200 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI WILSON, ALEXANDER F · 2009 to 2020
$19.8M
HYPERGEN: GENETICS OF LEFT VENTRICULAR HYPERTROPHYR01HL055673 · NHLBI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI ARNETT, DONNA K · 1996 to 2016
$18.1M
Multidisciplinary Clinical and Translational Science (MCTS) Program (UL1)UL1TR000150 · NCATS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI LLOYD-JONES, DONALD M · 2012 to 2013
$10.1M
CHARGE Consortium: Omics Discovery for CVD and Aging PhenotypesR01HL105756 · NHLBI · UNIVERSITY OF WASHINGTON · PI Bruce M Psaty, NICHOLAS L SMITH · 2011 to 2026
$9.5M
NCATS NIH HHS UL1 TR000124NCATS NIH HHS UL1 TR000150NCI NIH HHS P30 CA015704NCI NIH HHS P50 CA058223NCI NIH HHS R01 CA092447NCRR NIH HHS UL1 RR025741NHLBI NIH HHS R01 HL055673NHLBI NIH HHS R01 HL105756NIDA NIH HHS U01 DA020830NIEHS NIH HHS P30 ES010126NIMHD NIH HHS P20 MD006899
6 · The paper itself

Abstract

The identification and exploration of genetic loci that influence smoking behaviors have been conducted primarily in populations of the European ancestry. Here we report results of the first genome-wide association study meta-analysis of smoking behavior in African Americans in the Study of Tobacco in Minority Populations Genetics Consortium (n = 32,389). We identified one non-coding single-nucleotide polymorphism (SNP; rs2036527[A]) on chromosome 15q25.1 associated with smoking quantity (cigarettes per day), which exceeded genome-wide significance (β = 0.040, s.e. = 0.007, P = 1.84 × 10(-8)). This variant is present in the 5'-distal enhancer region of the CHRNA5 gene and defines the primary index signal reported in studies of the European ancestry. No other SNP reached genome-wide significance for smoking initiation (SI, ever vs never smoking), age of SI, or smoking cessation (SC, former vs current smoking). Informative associations that approached genome-wide significance included three modestly correlated variants, at 15q25.1 within PSMA4, CHRNA5 and CHRNA3 for smoking quantity, which are associated with a second signal previously reported in studies in European ancestry populations, and a signal represented by three SNPs in the SPOCK2 gene on chr10q22.1. The association at 15q25.1 confirms this region as an important susceptibility locus for smoking quantity in men and women of African ancestry. Larger studies will be needed to validate the suggestive loci that did not reach genome-wide significance and further elucidate the contribution of genetic variation to disparities in cigarette consumption, SC and smoking-attributable disease between African Americans and European Americans.

Indexed as

AdultAgedBlack or African AmericanChromosomes, Human, Pair 10Chromosomes, Human, Pair 15FemaleGenetic LociGenetic Predisposition to DiseaseGenetic VariationGenome-Wide Association StudyGenotypeHumansMaleMiddle AgedNerve Tissue ProteinsPhenotypeCHRNA5 protein, humanNerve Tissue ProteinsProteoglycansReceptors, NicotinicSPOCK2 protein, human

Identifiers

PMID22832964
PMCPMC3365260
OpenAlexW2128448881

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.