Evidence map›Paper›PMID 22832124›Full record

ArticleVirology2012

A single amino acid change resulting in loss of fluorescence of eGFP in a viral fusion protein confers fitness and growth advantage to the recombinant vesicular stomatitis virus.

Phat X Dinh, Debasis Panda, Phani B Das, Subash C Das, Anshuman Das, Asit K Pattnaik

Abstract read
In one paragraph

Article in Virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Oncolytic viruses: From bench to bedside with a focus on safety.Human vaccines & immunotherapeutics · 2015
    Review
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Phat X DinhSchool of Veterinary Medicine and Biomedical Sciences, University of Nebraska-Lincoln, Lincoln, Nebraska 68583-0900, USA.
Debasis Panda
Phani B Das
Subash C Das
Anshuman Das
Asit K Pattnaik
University of Nebraska–Lincoln · US

Funding

VSV RNA Transcription and ReplicationR01AI034956 · NIAID · UNIVERSITY OF NEBRASKA LINCOLN · PI PATTNAIK, ASIT K. · 2001 to 2005
$1.5M
NIAID NIH HHS R01 AI034956NIAID NIH HHS R01AI34956
6 · The paper itself

Abstract

Using a recombinant vesicular stomatitis virus encoding eGFP fused in-frame with an essential viral replication protein, the phosphoprotein P, we show that during passage in culture, the virus mutates the nucleotide C289 within eGFP of the fusion protein PeGFP to A or T, resulting in R97S/C amino acid substitution and loss of fluorescence. The resultant non-fluorescent virus exhibits increased fitness and growth advantage over its fluorescent counterpart. The growth advantage of the non-fluorescent virus appears to be due to increased transcription and replication activities of the PeGFP protein carrying the R97S/C substitution. Further, our results show that the R97S/C mutation occurs prior to accumulation of mutations that can result in loss of expression of the gene inserted at the G-L gene junction. These results suggest that fitness gain is more important for the recombinant virus than elimination of expression of the heterologous gene.

Indexed as

Amino Acid SubstitutionFluorescenceRecombination, GeneticAnimalsCell LineCricetinaeFluorescent DyesGreen Fluorescent ProteinsTranscription, GeneticVesicular stomatitis Indiana virusViral Fusion ProteinsVirus Replicationenhanced green fluorescent proteinFluorescent DyesGreen Fluorescent ProteinsViral Fusion Proteins

Identifiers

PMID22832124
PMCPMC3423531
OpenAlexW1993958857

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.