Evidence map›Paper›PMID 22832038›Full record

ArticleMicroscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada2012

High-resolution optical imaging of zebrafish larval ribbon synapse protein RIBEYE, RIM2, and CaV 1.4 by stimulation emission depletion microscopy.

Caixia Lv, Travis J Gould, Joerg Bewersdorf, David Zenisek

Open access · greenAbstract readEvaluation Study
In one paragraph

Article in Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Role of Ribeye PXDLS/T-binding cleft in normal synaptic ribbon function.bioRxiv : the preprint server for biology · 2023
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Adhesion GPCR Latrophilin 3 regulates synaptic function of cone photoreceptors in a trans-synaptic manner.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  10. Biochemistry and physiology of zebrafish photoreceptors.Pflugers Archiv : European journal of physiology · 2021
    Review
  11. Transmission at rod and cone ribbon synapses in the retina.Pflugers Archiv : European journal of physiology · 2021
    Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Review
  18. Article
  19. Leveraging Zebrafish to Study Retinal Degenerations.Frontiers in cell and developmental biology · 2018
    Review
  20. Expansion microscopy of zebrafish for neuroscience and developmental biology studies.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Caixia LvDepartment of Cellular and Molecular Physiology, Yale University School of Medicine, New Haven, CT 06520, USA.
Travis J Gould
Joerg Bewersdorf
David Zenisek
Yale University · US

Funding

Yale Core Grant For Vision ResearchP30EY000785 · NEI · YALE UNIVERSITY · PI TIAN, NING · 1985 to 2010
$5.8M
Investigating the Role of Ribeye in Retinal Ribbon FunctionR01EY021195 · NEI · YALE UNIVERSITY · PI ZENISEK, DAVID PAUL · 2011 to 2019
$3.3M
Development of a model system for presynaptic studyR21EY018111 · NEI · YALE UNIVERSITY · PI ZENISEK, DAVID PAUL · 2007 to 2009
$534k
NEI NIH HHS P30 EY000785NEI NIH HHS P30 EY000785-36NEI NIH HHS R01 EY021195NEI NIH HHS R21 EY01811NEI NIH HHS R21 EY018111
6 · The paper itself

Abstract

The synaptic ribbon is a unique presynaptic structure with an intricate morphology in photoreceptors. Because of the resolution limit in conventional fluorescence microscopy, investigating ribbon protein locations has been challenging, especially in the early development stages of model animals. Here, we used stimulated emission depletion microscopy, a super-resolution imaging technique, to look at retina sections in 4 days post-fertilization (dpf) zebrafish. We observed that in photoreceptor cells, RIBEYE and RIM2 are expressed along the synaptic ribbon, with RIM2 consistently located inside of the horseshoe-shaped synaptic ribbon structure with RIBEYE located on the outside. The L-type calcium channel subunit, CACNA1F, exhibited small spot-like staining beneath the RIM2 and RIBEYE structures. Using morpholino antisense oligonucleotides to knock down RIBEYE expression, we observed fewer and shorter ribbons in the photoreceptor outer plexiform layers of 4 dpf fish retina as well as a reduction in RIM2 expression. The clustering of CACNA1F in these blind fish was no longer observed, but instead showed a diffuse expression in the photoreceptor terminal.

Indexed as

AnimalsCalcium Channels, L-TypeEye ProteinsLarvaMicroscopyPhotoreceptor CellsProtein TransportRetinaSynapsesZebrafishZebrafish Proteinscacna1fb protein, zebrafishCalcium Channels, L-Typectbp2a protein, zebrafishEye ProteinsZebrafish Proteins

Identifiers

PMID22832038
PMCPMC3709260
OpenAlexW2118814989

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.