Evidence map›Paper›PMID 22829725›Full record

ArticleBioinformation2012

Bacterial genome mapper: A comparative bacterial genome mapping tool.

Kang Seon Lee, Ryong Nam Kim, Byoung Ha Yoon, Dae Soo Kim, Sang Haeng Choi, Dong Wook Kim, Seong Hyeuk Nam, Aeri Kim, Aram Kang, Kun Hyang Park and 3 more

Abstract read
In one paragraph

Article in Bioinformation, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Kang Seon Lee
Ryong Nam Kim
Byoung Ha Yoon
Dae Soo Kim
Sang Haeng Choi
Dong Wook Kim
Seong Hyeuk Nam
Aeri Kim
Aram Kang
Kun Hyang Park
Jae Eun Jung
Sung Hwa Chae
Hong Seog Park

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

unlabelledRecently, next generation sequencing (NGS) technologies have led to a revolutionary increase in sequencing speed and costefficacy. Consequently, a vast number of contigs from many recently sequenced bacterial genomes remain to be accurately mapped and annotated, requiring the development of more convenient bioinformatics programs. In this paper, we present a newly developed web-based bioinformatics program, Bacterial Genome Mapper, which is suitable for mapping and annotating contigs that have been assembled from bacterial genome sequence raw data. By constructing a multiple alignment map between target contig sequences and two reference bacterial genome sequences, this program also provides very useful comparative genomics analysis of draft bacterial genomes. AVAILABILITY: The database is available for free at http://mbgm.kribb.re.kr.

Indexed as

bacterial genomecontig mapping program

Identifiers

PMID22829725
PMCPMC3398773

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.