Evidence map›Paper›PMID 22829599›Full record

ArticleThe Journal of biological chemistry2012

DEF6, a novel substrate for the Tec kinase ITK, contains a glutamine-rich aggregation-prone region and forms cytoplasmic granules that co-localize with P-bodies.

Fiona Hey, Nathan Czyzewicz, Peter Jones, Fred Sablitzky

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.5field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 28 citations in OpenAlex.

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  11. Regulation of Effector Treg Cells in Murine Lupus.Arthritis & rheumatology (Hoboken, N.J.) · 2016
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Fiona HeySchool of Biology, Molecular Cell and Developmental Biology, The University of Nottingham, Nottingham NG7 2UH, United Kingdom.
Nathan Czyzewicz
Peter Jones
Fred Sablitzky
University of Nottingham · GB

Funding

Medical Research Council
6 · The paper itself

Abstract

Localization of DEF6 (SLAT/IBP), a Rho-family guanine nucleotide exchange factor, to the center of the immune synapse is dependent upon ITK, a Tec-family kinase that regulates the spatiotemporal organization of components of T cell signaling pathways and Cdc42-dependent actin polymerization. Here we demonstrate that ITK both interacts with DEF6 and phosphorylates DEF6 at tyrosine residues Tyr(210) and Tyr(222). Expression of a GFP-tagged Y210E-Y222E phosphomimic resulted in the formation of DEF6 cytoplasmic granules that co-localized with decapping enzyme 1 (DCP1), a marker of P-bodies; sites of mRNA degradation. Similarly treatment of cells with puromycin or sodium arsenite, reagents that arrest translation, also resulted in the accumulation of DEF6 in cytoplasmic granules. Bioinformatics analysis identified a glutamine-rich, heptad-repeat region; a feature of aggregating proteins, within the C-terminal region of DEF6 with the potential to promote granule formation through a phosphorylation-dependent unmasking of this region. These data suggest that in addition to its role as a GEF, DEF6 may also function in regulating mRNA translation.

Indexed as

AnimalsArsenatesChlorocebus aethiopsCOS CellsCytoplasmic GranulesDNA-Binding ProteinsEndoribonucleasesGuanine Nucleotide Exchange FactorsHumansJurkat CellsNuclear ProteinsPhosphorylationProtein BiosynthesisProtein Structure, TertiaryProtein Synthesis InhibitorsProtein-Tyrosine KinasesArsenatesDCP1b protein, humanDEF6 protein, humanDNA-Binding Proteinsemt protein-tyrosine kinaseEndoribonucleasesGuanine Nucleotide Exchange FactorsNuclear ProteinsProtein Synthesis InhibitorsProtein-Tyrosine KinasesPuromycinRNA, Messengersodium arsenate

Identifiers

PMID22829599
PMCPMC3438939
OpenAlexW1985106044

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.