Evidence map›Paper›PMID 22829149›Full record

ArticleThe Plant cell2012

Pod corn is caused by rearrangement at the Tunicate1 locus.

Jong-Jin Han, David Jackson, Robert Martienssen

Abstract read
In one paragraph

Article in The Plant cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Article
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  5. Article
  6. Review
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  9. Review
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  11. Article
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  14. Review
  15. Article
  16. Article
  17. Gene duplication at theProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  18. Mapping Regulatory Determinants in Plants.Frontiers in genetics · 2020
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Jong-Jin HanCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
David Jackson
Robert Martienssen

Funding

Transposons, RNA Interference and HeterochromatinR01GM067014 · NIGMS · COLD SPRING HARBOR LABORATORY · PI MARTIENSSEN, ROBERT A · 2003 to 2016
$4.1M
NIGMS NIH HHS R01 GM067014
6 · The paper itself

Abstract

Pod corn (Zea mays var tunicata) was once regarded as ancestral to cultivated maize, and was prized by pre-Columbian cultures for its magical properties. Tunicate1 (Tu1) is a dominant pod corn mutation in which kernels are completely enclosed in leaflike glumes. Here we show that Tu1 encodes a MADS box transcription factor expressed in leaves whose 5' regulatory region is fused by a 1.8-Mb chromosomal inversion to the 3' region of a gene expressed in the inflorescence. Both genes are further duplicated, accounting for classical derivative alleles isolated by recombination, and Tu1 transgenes interact with these derivative alleles in a dose-dependent manner. In young ear primordia, TU1 proteins are nuclearly localized in specific cells at the base of spikelet pair meristems. Tu1 branch determination defects resemble those in ramosa mutants, which encode regulatory proteins expressed in these same cells, accounting for synergism in double mutants discovered almost 100 years ago. The Tu1 rearrangement is not found in ancestral teosinte and arose after domestication of maize.

Indexed as

Chromosome InversionGene DuplicationAllelesBase SequenceGene DosageGene Expression Regulation, PlantGenetic LociInflorescenceMADS Domain ProteinsMeristemMolecular Sequence DataMutationPhenotypePlant LeavesPlant ProteinsPlants, Genetically ModifiedMADS Domain ProteinsPlant ProteinsRecombinant Fusion ProteinsTranscription Factors

Identifiers

PMID22829149
PMCPMC3426111

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.