Evidence map›Paper›PMID 22828628›Full record

ArticleNature communications2012

Comprehensive interrogation of natural TALE DNA-binding modules and transcriptional repressor domains.

Le Cong, Ruhong Zhou, Yu-Chi Kuo, Margaret Cunniff, Feng Zhang

Open access · bronzeAbstract read
In one paragraph

Article in Nature communications, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 182 papers.

0numbers the graph read from it
0cells of the map it votes in
182citing papers in PubMed
22.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

182 citing papers in PubMed, 332 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Diversity and structural-functional insights of alpha-solenoid proteins.Protein science : a publication of the Protein Society · 2024
    Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Synthetic Gene Circuits for Regulation of Next-Generation Cell-Based Therapeutics.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Review
  16. Review
  17. Neuroepigenetic Editing.Methods in molecular biology (Clifton, N.J.) · 2024
    Review
  18. Review
  19. Review
  20. Review

122 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Le CongBroad Institute of MIT and Harvard, Cambridge, Massachusetts 02142, USA.
Ruhong Zhou
Yu-Chi Kuo
Margaret Cunniff
Feng Zhang
Broad Institute · USMassachusetts Institute of Technology · USIBM Research - Thomas J. Watson Research Center · US

Funding

Probing Neuropsychiatric Diseases Using Targeted Epigenome and Genome EngineeringDP1MH100706 · NIMH · BROAD INSTITUTE, INC. · PI ZHANG, FENG · 2012 to 2016
$4.3M
Genome-wide Light-inducible Tuning of Transcriptional Network DynamicR01NS073124 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI ARLOTTA, PAOLA, JOUNG, J. KEITH · 2010 to 2014
$3.3M
Howard Hughes Medical InstituteNIMH NIH HHS DP1 MH100706NINDS NIH HHS 1R01NS073124NINDS NIH HHS R01 NS073124
6 · The paper itself

Abstract

Transcription activator-like effectors are sequence-specific DNA-binding proteins that harbour modular, repetitive DNA-binding domains. Transcription activator-like effectors have enabled the creation of customizable designer transcriptional factors and sequence-specific nucleases for genome engineering. Here we report two improvements of the transcription activator-like effector toolbox for achieving efficient activation and repression of endogenous gene expression in mammalian cells. We show that the naturally occurring repeat-variable diresidue Asn-His (NH) has high biological activity and specificity for guanine, a highly prevalent base in mammalian genomes. We also report an effective transcription activator-like effector transcriptional repressor architecture for targeted inhibition of transcription in mammalian cells. These findings will improve the precision and effectiveness of genome engineering that can be achieved using transcription activator-like effectors.

Indexed as

Cell LineComputational BiologyDNADNA-Binding ProteinsGenetic EngineeringHumansModels, MolecularTranscriptional ActivationTranscription FactorsDNADNA-Binding ProteinsTranscription Factors

Identifiers

PMID22828628
PMCPMC3556390
OpenAlexW2158023793

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.