Evidence map›Paper›PMID 22827539›Full record

ArticleAlcoholism, clinical and experimental research2013

Coordinated dynamic gene expression changes in the central nucleus of the amygdala during alcohol withdrawal.

Kate Freeman, Mary M Staehle, Rajanikanth Vadigepalli, Gregory E Gonye, Babatunde A Ogunnaike, Jan B Hoek, James S Schwaber

Abstract read
In one paragraph

Article in Alcoholism, clinical and experimental research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. AlteredeNeuro · 2026
    Article
  2. Review
  3. AlteredbioRxiv : the preprint server for biology · 2025
    Article
  4. Article
  5. Article
  6. Epigenetic Modulation of Opioid Receptors by Drugs of Abuse.International journal of molecular sciences · 2022
    Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Review
  14. Article
  15. Review
  16. The role of the gut-brain axis in alcohol use disorders.Progress in neuro-psychopharmacology & biological psychiatry · 2016
    Review
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Kate Freeman *Department of Pathology, Anatomy and Cell Biology (KF, MMS, RV, GEG, JBH, JSS), Daniel Baugh Institute for Functional Genomics and Computational Biology, Thomas Jefferson University, Philadelphia, Pennsylvania; Department of Chemical Engineering (MMS), Rowan University, Glassboro, New Jersey; Department of Chemical Engineering (MMS, BAO), University of Delaware, Newark, Delaware.
Mary M Staehle *Department of Pathology, Anatomy and Cell Biology (KF, MMS, RV, GEG, JBH, JSS), Daniel Baugh Institute for Functional Genomics and Computational Biology, Thomas Jefferson University, Philadelphia, Pennsylvania; Department of Chemical Engineering (MMS), Rowan University, Glassboro, New Jersey; Department of Chemical Engineering (MMS, BAO), University of Delaware, Newark, Delaware.
Rajanikanth VadigepalliDepartment of Pathology, Anatomy and Cell Biology (KF, MMS, RV, GEG, JBH, JSS), Daniel Baugh Institute for Functional Genomics and Computational Biology, Thomas Jefferson University, Philadelphia, Pennsylvania; Department of Chemical Engineering (MMS), Rowan University, Glassboro, New Jersey; Department of Chemical Engineering (MMS, BAO), University of Delaware, Newark, Delaware.
Gregory E GonyeDepartment of Pathology, Anatomy and Cell Biology (KF, MMS, RV, GEG, JBH, JSS), Daniel Baugh Institute for Functional Genomics and Computational Biology, Thomas Jefferson University, Philadelphia, Pennsylvania; Department of Chemical Engineering (MMS), Rowan University, Glassboro, New Jersey; Department of Chemical Engineering (MMS, BAO), University of Delaware, Newark, Delaware.
Babatunde A OgunnaikeDepartment of Pathology, Anatomy and Cell Biology (KF, MMS, RV, GEG, JBH, JSS), Daniel Baugh Institute for Functional Genomics and Computational Biology, Thomas Jefferson University, Philadelphia, Pennsylvania; Department of Chemical Engineering (MMS), Rowan University, Glassboro, New Jersey; Department of Chemical Engineering (MMS, BAO), University of Delaware, Newark, Delaware.
Jan B HoekDepartment of Pathology, Anatomy and Cell Biology (KF, MMS, RV, GEG, JBH, JSS), Daniel Baugh Institute for Functional Genomics and Computational Biology, Thomas Jefferson University, Philadelphia, Pennsylvania; Department of Chemical Engineering (MMS), Rowan University, Glassboro, New Jersey; Department of Chemical Engineering (MMS, BAO), University of Delaware, Newark, Delaware.
James S SchwaberDepartment of Pathology, Anatomy and Cell Biology (KF, MMS, RV, GEG, JBH, JSS), Daniel Baugh Institute for Functional Genomics and Computational Biology, Thomas Jefferson University, Philadelphia, Pennsylvania; Department of Chemical Engineering (MMS), Rowan University, Glassboro, New Jersey; Department of Chemical Engineering (MMS, BAO), University of Delaware, Newark, Delaware.

Funding

Alcohol Tissue InjuryT32AA007463 · NIAAA · THOMAS JEFFERSON UNIVERSITY · PI HOEK, JOANNES B, VADIGEPALLI, RAJANIKANTH · 1985 to 2021
$9.1M
Modeling Central Autonomic Regulatory Network Adaptation to HypertensionR01HL111621 · NHLBI · THOMAS JEFFERSON UNIVERSITY · PI SCHWABER, JAMES, VADIGEPALLI, RAJANIKANTH · 2012 to 2015
$2.4M
Core Facilities to Support Alcohol Research.R24AA014986 · NIAAA · THOMAS JEFFERSON UNIVERSITY · PI HOEK, JOANNES B · 2005 to 2010
$2.4M
Integrated Signaling and Transcriptional Networks in Circadian Clock NeuronsR01GM076495 · NIGMS · THOMAS JEFFERSON UNIVERSITY · PI SCHWABER, JAMES · 2007 to 2010
$2.1M
Mechanisms of Central Autonomic Orchestration of Blood PressureR33HL087361 · NHLBI · THOMAS JEFFERSON UNIVERSITY · PI SCHWABER, JAMES · 2006 to 2008
$1.8M
Integrated Modeling of Adaptive Neuronal RegulationR01GM083108 · NIGMS · THOMAS JEFFERSON UNIVERSITY · PI SCHWABER, JAMES, VADIGEPALLI, RAJANIKANTH · 2009 to 2012
$1.5M
Modeling Gene Networks in Neuronal Adaptation to AlcoholR01AA015601 · NIAAA · THOMAS JEFFERSON UNIVERSITY · PI SCHWABER, JAMES · 2006 to 2009
$1.4M
Mentoring Junior Investigators in Alcohol ResearchK05AA017261 · NIAAA · THOMAS JEFFERSON UNIVERSITY · PI HOEK, JOANNES B · 2008 to 2012
$1.1M
Mechanisms of Central Autonomic Orchestration of Blood PressureR33HL088283 · NHLBI · THOMAS JEFFERSON UNIVERSITY · PI VADIGEPALLI, RAJANIKANTH · 2006 to 2008
$846k
Microarray Profiles of Alcohol's Effects on CNSR01AA013204 · NIAAA · THOMAS JEFFERSON UNIVERSITY · PI SCHWABER, JAMES · 2001 to 2003
$668k
NHLBI NIH HHS R01 HL111621NHLBI NIH HHS R33 HL-087361NHLBI NIH HHS R33 HL087361NHLBI NIH HHS R33 HL088283NIAAA NIH HHS K05 AA017261NIAAA NIH HHS R01 AA013204NIAAA NIH HHS R01 AA-015601NIAAA NIH HHS R01 AA015601NIAAA NIH HHS R24 AA-014986NIAAA NIH HHS R24 AA014986NIAAA NIH HHS T32 AA-007463NIAAA NIH HHS T32 AA007463NIGMS NIH HHS GM-083108NIGMS NIH HHS R01 GM-076495NIGMS NIH HHS R01 GM076495NIGMS NIH HHS R01 GM083108
6 · The paper itself

Abstract

backgroundChronic alcohol use causes widespread changes in the cellular biology of the amygdala's central nucleus (CeA), a GABAergic center that integrates autonomic physiology with the emotional aspects of motivation and learning. While alcohol-induced neurochemical changes play a role in dependence and drinking behavior, little is known about the CeA's dynamic changes during withdrawal, a period of emotional and physiologic disturbance.

methodsWe used a qRT-PCR platform to measure 139 transcripts in 92 rat CeA samples from control (N = 33), chronically alcohol exposed (N = 26), and withdrawn rats (t = 4, 8, 18, 32, and 48 hours; N = 5, 10, 7, 6, 5). This focused transcript set allowed us to identify significant dynamic expression patterns during the first 48 hours of withdrawal and propose potential regulatory mechanisms.

resultsChronic alcohol exposure causes a limited number of small magnitude expression changes. In contrast, withdrawal results in a greater number of large changes within 4 hours of removal of the alcohol diet. Sixty-five of the 139 measured transcripts (47%) showed differential regulation during withdrawal. Over the 48-hour period, dynamic changes in the expression of γ-aminobutyric acid type A (GABA(A) ), ionotropic glutamate and neuropeptide system-related G-protein-coupled receptor subunits, and the Ras/Raf signaling pathway were seen as well as downstream transcription factors (TFs) and epigenetic regulators. Four temporally correlated gene clusters were identified with shared functional roles including NMDA receptors, MAPKKK and chemokine signaling cascades, and mediators of long-term potentiation, among others. Cluster promoter regions shared overrepresented binding sites for multiple TFs including Cebp, Usf-1, Smad3, Ap-2, and c-Ets, suggesting a potential regulatory role.

conclusionsDuring alcohol withdrawal, the CeA experiences rapid changes in mRNA expression of these functionally related transcripts that were not predicted by measurement during chronic exposure. This study provides new insight into dynamic expression changes during alcohol withdrawal and suggests novel regulatory relationships that potentially impact the aspects of emotional modulation.

Indexed as

Gene Expression RegulationAmygdalaAnimalsDown-RegulationEthanolGene Regulatory NetworksMaleMolecular Dynamics SimulationRatsRats, Sprague-DawleySubstance Withdrawal SyndromeEthanol

Identifiers

PMID22827539
PMCPMC4408903

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.