Evidence map›Paper›PMID 22826323›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2012

Activation-induced cytidine deaminase-initiated off-target DNA breaks are detected and resolved during S phase.

Muneer G Hasham, Kathy J Snow, Nina M Donghia, Jane A Branca, Mark D Lessard, Janet Stavnezer, Lindsay S Shopland, Kevin D Mills

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 34 citations in OpenAlex.

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  14. Aberrant recombination and repair during immunoglobulin class switching in BRCA1-deficient human B cells.Proceedings of the National Academy of Sciences of the United States of America · 2015
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  16. Review
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  19. Polyclonal hyper-IgE mouse model reveals mechanistic insights into antibody class switch recombination.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Muneer G HashamThe Jackson Laboratory, Bar Harbor, ME 04609, USA.
Kathy J Snow
Nina M Donghia
Jane A Branca
Mark D Lessard
Janet Stavnezer
Lindsay S Shopland
Kevin D Mills
Jackson Laboratory · USUniversity of Massachusetts Chan Medical School · US

Funding

Shared Resource ManagementP30CA034196 · NCI · JACKSON LABORATORY · PI William Carl Skarnes · 1985 to 2026
$61.9M
WNT SIGNALING IN PREIMPLANTATION EMBRYOP20RR018789 · NCRR · MAINE MEDICAL CENTER · PI WANG, ZACK Z. · 2003 to 2011
$18.9M
Homologous Recombination in Genome Stability and Tumor SuppressionR01CA138646 · NCI · JACKSON LABORATORY · PI MILLS, KEVIN D · 2009 to 2012
$1.4M
NCI NIH HHS P30 CA034196NCI NIH HHS R01 CA138646NCRR NIH HHS P20 RR018789
6 · The paper itself

Abstract

Activation-induced cytidine deaminase (AID) initiates DNA double-strand breaks (DSBs) in the IgH gene (Igh) to stimulate isotype class switch recombination (CSR), and widespread breaks in non-Igh (off-target) loci throughout the genome. Because the DSBs that initiate class switching occur during the G₁ phase of the cell cycle, and are repaired via end joining, CSR is considered a predominantly G₁ reaction. By contrast, AID-induced non-Igh DSBs are repaired by homologous recombination. Although little is known about the connection between the cell cycle and either induction or resolution of AID-mediated non-Igh DSBs, their repair by homologous recombination implicates post-G₁ phases. Coordination of DNA breakage and repair during the cell cycle is critical to promote normal class switching and prevent genomic instability. To understand how AID-mediated events are regulated through the cell cycle, we have investigated G₁-to-S control in AID-dependent genome-wide DSBs. We find that AID-mediated off-target DSBs, like those induced in the Igh locus, are generated during G₁. These data suggest that AID-mediated DSBs can evade G₁/S checkpoint activation and persist beyond G₁, becoming resolved during S phase. Interestingly, DSB resolution during S phase can promote not only non-Igh break repair, but also Ig CSR. Our results reveal novel cell cycle dynamics in response to AID-initiated DSBs, and suggest that the regulation of the repair of these DSBs through the cell cycle may ensure proper class switching while preventing AID-induced genomic instability.

Indexed as

DNA Breaks, Double-StrandedAICDA (Activation-Induced Cytidine Deaminase)AnimalsB-LymphocytesCells, CulturedCytidine DeaminaseDNA RepairG1 PhaseImmunoglobulin Class SwitchingImmunoglobulin IsotypesMiceMice, Inbred C57BLMice, KnockoutS PhaseAICDA (Activation-Induced Cytidine Deaminase)Cytidine DeaminaseImmunoglobulin Isotypes

Identifiers

PMID22826323
PMCPMC3424338
OpenAlexW2115119049

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.