Evidence map›Paper›PMID 22826255›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Archaeal virus with exceptional virion architecture and the largest single-stranded DNA genome.

Tomohiro Mochizuki, Mart Krupovic, Gérard Pehau-Arnaudet, Yoshihiko Sako, Patrick Forterre, David Prangishvili

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Viruses in astrobiology.Frontiers in microbiology · 2022
    Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. ICTV Virus Taxonomy Profile:The Journal of general virology · 2020
    Article
  11. Evolution and phylogeography ofVirus evolution · 2019
    Article
  12. Review
  13. Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. The enigmatic archaeal virosphere.Nature reviews. Microbiology · 2017
    Review
  19. Structure and mechanisms of viral transcription factors in archaea.Extremophiles : life under extreme conditions · 2017
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Tomohiro MochizukiUnité de Biologie Moléculaire du Gène chez les Extrêmophiles, Département de Microbiologie, Institut Pasteur, 75015 Paris, France.
Mart Krupovic
Gérard Pehau-Arnaudet
Yoshihiko Sako
Patrick Forterre
David Prangishvili

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Known viruses build their particles using a restricted number of redundant structural solutions. Here, we describe the Aeropyrum coil-shaped virus (ACV), of the hyperthermophilic archaeon Aeropyrum pernix, with a virion architecture not previously observed in the viral world. The nonenveloped, hollow, cylindrical virion is formed from a coiling fiber, which consists of two intertwining halves of a single circular nucleoprotein. The virus ACV is also exceptional for its genomic properties. It is the only virus with a single-stranded (ss) DNA genome among the known hyperthermophilic archaeal viruses. Moreover, the size of its circular genome, 24,893 nt, is double that of the largest known ssDNA genome, suggesting an efficient solution for keeping ssDNA intact at 90-95 °C, the optimal temperature range of A. pernix growth. The genome content of ACV is in line with its unique morphology and confirms that ACV is not closely related to any known virus.

Indexed as

AeropyrumArchaeal VirusesBase SequenceDNA, CircularDNA, Single-StrandedDNA VirusesElectrophoresis, Agar GelGenome, ViralModels, BiologicalMolecular Sequence DataVirionDNA, CircularDNA, Single-Stranded

Identifiers

PMID22826255
PMCPMC3421227

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.