Evidence map›Paper›PMID 22826228›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

HLA-B may be more protective against HIV-1 than HLA-A because it resists negative regulatory factor (Nef) mediated down-regulation.

Ushani S Rajapaksa, Demin Li, Yan-Chun Peng, Andrew J McMichael, Tao Dong, Xiao-Ning Xu

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed, 1 pooled it
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 1 synthesis or guideline pooled it, 56 citations in OpenAlex.

  1. A SYSTEMATIC REVIEW ON THE INFLUENCE OF HLA-B POLYMORPHISMS ON HIV-1 MOTHER-TO-CHILD-TRANSMISSION.The Brazilian journal of infectious diseases : an official publication of the Brazilian Society of Infectious Diseases
    Pooled it
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. An immunodominant NPNature immunology · 2022
    Article
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  9. Article
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  11. Article
  12. Analysis of the CD8Immunogenetics · 2018
    Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. HIV-1 Vpu Mediates HLA-C Downregulation.Cell host & microbe · 2016
    Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Ushani S RajapaksaMedical Research Council Human Immunology Unit, Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, United Kingdom.
Demin Li
Yan-Chun Peng
Andrew J McMichael
Tao Dong
Xiao-Ning Xu
Medical Research Council · GBMRC Human Immunology Unit · GBUniversity of Oxford · GB

Funding

Medical Research Council G0600520Medical Research Council G1001046
6 · The paper itself

Abstract

Human leukocyte antigen HLA-B alleles have better protective activity against HIV-1 than HLA-A alleles, possibly due to differences in HLA-restricted HIV-1-specific CD8+ cytotoxic T lymphocyte (CTL) function, but the mechanism is unknown. HIV-1 negative regulatory factor (Nef) mediates down-regulation of surface expression of class I HLA (HLA-I) and may therefore impair immune recognition by CTL. Because of sequence differences in the cytoplasmic domains, HLA-A and -B are down-regulated by Nef but HLA-C and -E are not affected. However, the latter are expressed at low levels and are not of major importance in the CTL responses to HIV-1. Here, we compared the role of the cytoplasmic domains of HLA-A and -B in Nef-mediated escape from CTL. We found HLA-B cytoplasmic domains were more resistant to Nef-mediated down-regulation than HLA-A cytoplasmic domains and demonstrated that these differences affect CTL recognition of virus-infected cells in vitro. We propose that the relative resistance to Nef-mediated down-regulation by the cytoplasmic domains of HLA-B compared with HLA-A contributes to the better control of HIV-1 infection associated with HLA-B-restricted CTLs.

Indexed as

AllelesAmino Acid SequenceCell LineCytoplasmDown-RegulationEpitopesgag Gene Products, Human Immunodeficiency VirusHIV-1HIV InfectionsHLA-A AntigensHLA-B7 AntigenHLA-B AntigensHLA-C AntigensHumansMolecular Sequence Datanef Gene Products, Human Immunodeficiency VirusEpitopesgag Gene Products, Human Immunodeficiency VirusHLA-A AntigensHLA-B7 AntigenHLA-B AntigensHLA-C Antigensnef Gene Products, Human Immunodeficiency VirusRecombinant Proteins

Identifiers

PMID22826228
PMCPMC3421200
OpenAlexW2007141946

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.