Evidence map›Paper›PMID 22826123›Full record

ArticleThe Journal of cell biology2012

Atg9 vesicles are an important membrane source during early steps of autophagosome formation.

Hayashi Yamamoto, Soichiro Kakuta, Tomonobu M Watanabe, Akira Kitamura, Takayuki Sekito, Chika Kondo-Kakuta, Rie Ichikawa, Masataka Kinjo, Yoshinori Ohsumi

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 403 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
403citing papers in PubMed, 1 pooled it
26.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

403 citing papers in PubMed, 1 synthesis or guideline pooled it, 643 citations in OpenAlex.

  1. Guideline
  2. Emerging mechanisms of ATG8-independent non-canonical autophagy.Journal of physiology and biochemistry · 2026
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Where and how do mammalian cells shape autophagosomes?The Journal of biological chemistry · 2026
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Core principles of autophagy initiation mechanisms.Nature structural & molecular biology · 2026
    Review
  18. miRNA family miR-29 inhibits PINK1-PRKN signaling via ATG9A.Molecular neurodegeneration advances · 2026
    Article
  19. Article
  20. Review

343 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Hayashi YamamotoFrontier Research Center, Tokyo Institute of Technology, Yokohama 226-8503, Japan.
Soichiro Kakuta
Tomonobu M Watanabe
Akira Kitamura
Takayuki Sekito
Chika Kondo-Kakuta
Rie Ichikawa
Masataka Kinjo
Yoshinori Ohsumi
Tokyo Institute of Technology · JPHokkaido University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During the process of autophagy, cytoplasmic materials are sequestered by double-membrane structures, the autophagosomes, and then transported to a lytic compartment to be degraded. One of the most fundamental questions about autophagy involves the origin of the autophagosomal membranes. In this study, we focus on the intracellular dynamics of Atg9, a multispanning membrane protein essential for autophagosome formation in yeast. We found that the vast majority of Atg9 existed on cytoplasmic mobile vesicles (designated Atg9 vesicles) that were derived from the Golgi apparatus in a process involving Atg23 and Atg27. We also found that only a few Atg9 vesicles were required for a single round of autophagosome formation. During starvation, several Atg9 vesicles assembled individually into the preautophagosomal structure, and eventually, they are incorporated into the autophagosomal outer membrane. Our findings provide conclusive linkage between the cytoplasmic Atg9 vesicles and autophagosomal membranes and offer new insight into the requirement for Atg9 vesicles at the early step of autophagosome formation.

Indexed as

AutophagyAutophagy-Related ProteinsCarrier ProteinsGolgi ApparatusIntracellular MembranesMembrane ProteinsPhagosomesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsStarvationAtg23 protein, S cerevisiaeATG27 protein, S cerevisiaeATG9 protein, S cerevisiaeAutophagy-Related ProteinsCarrier ProteinsMembrane ProteinsSaccharomyces cerevisiae Proteins

Identifiers

PMID22826123
PMCPMC3410421
OpenAlexW2017828774

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.