Evidence map›Paper›PMID 22825453›Full record

ArticleInfection and immunity2012

OxyR activation in Porphyromonas gingivalis in response to a hemin-limited environment.

Hua Xie, Cunge Zheng

Abstract read
In one paragraph

Article in Infection and immunity, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Trial
  2. Article
  3. Article
  4. Growth ofJournal of oral microbiology · 2023
    Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Expression patterns ofInfection and drug resistance · 2018
    Article
  12. Review
  13. Article
  14. Genes Contributing toFrontiers in cellular and infection microbiology · 2017
    Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Hua XieSchool of Dentistry, Meharry Medical College, Nashville, Tennessee, USA. hxie@mmc.edu
Cunge Zheng

Funding

TECHNOLOGIES AND RESOURCES FOR CORE LABORATORIESU54RR026140 · NCRR · MEHARRY MEDICAL COLLEGE · PI GOODWIN, JEFFREY SHAWN · 2009 to 2011
$12.9M
Identification of a novel signaling network in Porphyromonas gingivalisR21DE020915 · NIDCR · MEHARRY MEDICAL COLLEGE · PI XIE, HUA · 2011 to 2012
$424k
NCRR NIH HHS U54 RR026140NCRR NIH HHS U54RR026140NIDCR NIH HHS DE020915NIDCR NIH HHS R21 DE020915
6 · The paper itself

Abstract

Porphyromonas gingivalis is a Gram-negative obligately anaerobic bacterium associated with several forms of periodontal disease, most closely with chronic periodontitis. Previous studies demonstrated that OxyR plays an important role in the aerotolerance of P. gingivalis by upregulating the expression of oxidative-stress genes. Increases in oxygen tension and in H(2)O(2) both induce activation of OxyR. It is also known that P. gingivalis requires hemin as an iron source for its growth. In this study, we found that a hemin-limited growth environment significantly enhanced OxyR activity in P. gingivalis. As a result, expression of sod, dps, and ahpC was also upregulated. Using a chromatin immunoprecipitation quantitative PCR (qPCR) analysis, DNA binding of activated OxyR to the promoter of the sod gene was enhanced in P. gingivalis grown under hemin-limited conditions compared to excess-hemin conditions. Cellular tolerance of H(2)O(2) was also enhanced when hemin was limited in the growth medium of P. gingivalis. Our work supports a model in which hemin serves as a signal for the regulation of OxyR activity and indicates that P. gingivalis coordinately regulates expression of oxidative-stress-related genes by this hemin concentration-dependent pathway.

Indexed as

Culture MediaDNAEnzyme-Linked Immunosorbent AssayGene Expression Regulation, BacterialHeminIronMutationOxidative StressPolymerase Chain ReactionPorphyromonas gingivalisProtein BindingRNA, BacterialTranscription FactorsCulture MediaDNAHeminIronOxyR protein, P gingivalisRNA, BacterialTranscription Factors

Identifiers

PMID22825453
PMCPMC3457554

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.