Evidence map›Paper›PMID 22824086›Full record

ArticleJournal of molecular biology2012

Target binding to S100B reduces dynamic properties and increases Ca(2+)-binding affinity for wild type and EF-hand mutant proteins.

Melissa A Liriano, Kristen M Varney, Nathan T Wright, Cassandra L Hoffman, Eric A Toth, Rieko Ishima, David J Weber

Abstract read
In one paragraph

Article in Journal of molecular biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Calpain Regulation and Dysregulation-Its Effects on the Intercalated Disk.International journal of molecular sciences · 2023
    Review
  5. Review
  6. Article
  7. S100 proteins as therapeutic targets.Biophysical reviews · 2018
    Review
  8. X-ray crystal structure of human calcium-bound S100A1.Acta crystallographica. Section F, Structural biology communications · 2017
    Article
  9. Article
  10. S100 proteins in cancer.Nature reviews. Cancer · 2015
    Review
  11. Article
  12. Structure of the S100A4/myosin-IIA complex.BMC structural biology · 2013
    Article
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Melissa A LirianoDepartment of Biochemistry and Molecular Biology, University of Maryland School of Medicine, Baltimore, MD 21201, USA.
Kristen M Varney
Nathan T Wright
Cassandra L Hoffman
Eric A Toth
Rieko Ishima
David J Weber

Funding

INFECTIOUS DISEASES TRAINING PROGRAMT32AI007046 · NIAID · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI Alison K Criss, William A Petri · 1985 to 2026
$15.3M
950 MHz NMR Spectrometer with Cryogenic ProbeS10RR029601 · NCRR · UNIVERSITY OF MARYLAND BALTIMORE · PI WEBER, DAVID JOSEPH · 2010 to 2010
$8.0M
Bordetella cyclase toxin: effects on leukocytes and respiratory epithelial cellsR01AI018000 · NIAID · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI HEWLETT, ERIK L · 1985 to 2015
$5.6M
Restoration of Tumor Suppression Activity in Malignant MelanomaR01CA107331 · NCI · UNIVERSITY OF MARYLAND BALTIMORE · PI WEBER, DAVID JOSEPH · 2006 to 2015
$5.4M
The Structure and Function of S100 ProteinsR01GM058888 · NIGMS · UNIVERSITY OF MARYLAND BALTIMORE · PI WEBER, DAVID JOSEPH · 1999 to 2010
$3.4M
Function and Secretion of Bordetella Filamentous HemagglutininR01AI094991 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI COTTER, PEGGY A · 2012 to 2016
$2.0M
800 MHZ NMR SPECTROMETERS10RR015741 · NCRR · UNIVERSITY OF MARYLAND BALTIMORE · PI WEBER, DAVID JOSEPH · 2001 to 2001
$500k
600 MHz NMR Spectrometer ConsoleS10RR023447 · NCRR · UNIVERSITY OF MARYLAND BALTIMORE · PI WEBER, DAVID JOSEPH · 2007 to 2007
$362k
Cryoprobe for a 600 Mhz NMR spectrometerS10RR016812 · NCRR · UNIVERSITY OF MARYLAND BALTIMORE · PI WEBER, DAVID JOSEPH · 2002 to 2002
$231k
Multimode Fluorescence Microplate ReaderS10RR031729 · NCRR · UNIVERSITY OF MARYLAND BALTIMORE · PI WEBER, DAVID JOSEPH · 2011 to 2011
$164k
Protein dynamics of calcium-S100A5 in the presence and absence of target peptideF31CA144560 · NCI · UNIVERSITY OF MARYLAND BALTIMORE · PI LIRIANO, MELISSA A. · 2009 to 2012
$115k
600 MHZ NMR SPECTROMETERS10RR010441 · NCRR · UNIVERSITY OF MARYLAND BALTIMORE · PI WEBER, DAVID JOSEPH · 1995 to 1995
–
NCI NIH HHS CA107331NCI NIH HHS CA144560-02NCI NIH HHS F31 CA144560NCI NIH HHS R01 CA107331NCRR NIH HHS S10 RR015741NCRR NIH HHS S10 RR016812NCRR NIH HHS S10 RR023447NCRR NIH HHS S10 RR029601NCRR NIH HHS S10 RR031729NCRR NIH HHS S10 RR10441NCRR NIH HHS S10 RR15741NCRR NIH HHS S10 RR16812NCRR NIH HHS S10 RR23447NIAID NIH HHS R01 AI018000NIAID NIH HHS R01 AI094991NIAID NIH HHS T32 AI007046NIGMS NIH HHS GM58888NIGMS NIH HHS R01 GM058888
6 · The paper itself

Abstract

Mutations in the second EF-hand (D61N, D63N, D65N, and E72A) of S100B were used to study its Ca(2+) binding and dynamic properties in the absence and presence of a bound target, TRTK-12. With (D63N)S100B as an exception ((D63N)K(D)=50±9 μM), Ca(2+) binding to EF2-hand mutants were reduced by more than 8-fold in the absence of TRTK-12 ((D61N)K(D)=412±67 μM, (D65N)K(D)=968±171 μM, and (E72A)K(D)=471±133 μM), when compared to wild-type protein ((WT)K(D)=56±9 μM). For the TRTK-12 complexes, the Ca(2+)-binding affinity to wild type ((WT+TRTK)K(D)=12±10 μM) and the EF2 mutants was increased by 5- to 14-fold versus in the absence of target ((D61N+TRTK)K(D)=29±1.2 μM, (D63N+TRTK)K(D)=10±2.2 μM, (D65N+TRTK)K(D)=73±4.4 μM, and (E72A+TRTK)K(D)=18±3.7 μM). In addition, R(ex), as measured using relaxation dispersion for side-chain (15)N resonances of Asn63 ((D63N)S100B), was reduced upon TRTK-12 binding when measured by NMR. Likewise, backbone motions on multiple timescales (picoseconds to milliseconds) throughout wild type, (D61N)S100B, (D63N)S100B, and (D65N)S100B were lowered upon binding TRTK-12. However, the X-ray structures of Ca(2+)-bound (2.0Å) and TRTK-bound (1.2Å) (D63N)S100B showed no change in Ca(2+) coordination; thus, these and analogous structural data for the wild-type protein could not be used to explain how target binding increased Ca(2+)-binding affinity in solution. Therefore, a model for how S100B-TRTK-12 complex formation increases Ca(2+) binding is discussed, which considers changes in protein dynamics upon binding the target TRTK-12.

Indexed as

Binding SitesCalciumCalcium-Binding ProteinsCapZ Actin Capping ProteinCrystallography, X-RayMutant ProteinsMutationNerve Growth FactorsNuclear Magnetic Resonance, BiomolecularOligopeptidesPeptide FragmentsProtein BindingProtein ConformationS100 Calcium Binding Protein beta SubunitS100 ProteinsThermodynamicsCalciumCalcium-Binding ProteinsCapZ Actin Capping ProteinMutant ProteinsNerve Growth FactorsOligopeptidesPeptide FragmentsS100 Calcium Binding Protein beta SubunitS100 ProteinsTRTK-12 peptide

Identifiers

PMID22824086
PMCPMC3462298

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.