Evidence map›Paper›PMID 22822210›Full record

ArticlePlant physiology2012

A structural basis for the biosynthesis of the major chlorogenic acids found in coffee.

Laura A Lallemand, Chloe Zubieta, Soon Goo Lee, Yechun Wang, Samira Acajjaoui, Joanna Timmins, Sean McSweeney, Joseph M Jez, James G McCarthy, Andrew A McCarthy

Abstract read
In one paragraph

Article in Plant physiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Genome-Wide Datasets of Chicories (International journal of molecular sciences · 2023
    Pooled it
  2. Article
  3. Review
  4. Review
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Identification ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2023
    Article
  17. Article
  18. Review
  19. Structural identification of catalytic His158 of PtMAC2p fromFrontiers in bioengineering and biotechnology · 2023
    Article
  20. Exploring the metabolic and physiological roles ofFrontiers in plant science · 2023
    Article

7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Laura A LallemandEuropean Synchrotron Radiation Facility, BP 181, 38043 Grenoble, France.
Chloe Zubieta
Soon Goo Lee
Yechun Wang
Samira Acajjaoui
Joanna Timmins
Sean McSweeney
Joseph M Jez
James G McCarthy
Andrew A McCarthy

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chlorogenic acids (CGAs) are a group of phenolic secondary metabolites produced by certain plant species and an important component of coffee (Coffea spp.). The CGAs have been implicated in biotic and abiotic stress responses, while the related shikimate esters are key intermediates for lignin biosynthesis. Here, two hydroxycinnamoyl-coenzyme A shikimate/quinate hydroxycinnamoyl transferases (HCT/HQT) from coffee were biochemically characterized. We show, to our knowledge for the first time, that in vitro, HCT is capable of synthesizing the 3,5-O-dicaffeoylquinic acid diester, a major constituent of the immature coffee grain. In order to further understand the substrate specificity and catalytic mechanism of the HCT/HQT, we performed structural and mutagenesis studies of HCT. The three-dimensional structure of a native HCT and a proteolytically stable lysine mutant enabled the identification of important residues involved in substrate specificity and catalysis. Site-directed mutagenesis confirmed the role of residues leucine-400 and phenylalanine-402 in substrate specificity and of histidine-153 and the valine-31 to proline-37 loop in catalysis. In addition, the histidine-154-asparagine mutant was observed to produce 4-fold more dichlorogenic acids compared with the native protein. These data provide, to our knowledge, the first structural characterization of a HCT and, in conjunction with the biochemical and mutagenesis studies presented here, delineate the underlying molecular-level determinants for substrate specificity and catalysis. This work has potential applications in fine-tuning the levels of shikimate and quinate esters (CGAs including dichlorogenic acids) in different plant species in order to generate reduced or elevated levels of the desired target compounds.

Indexed as

AcyltransferasesAmino AcidsAmino Acid SequenceCatalytic DomainChlorogenic AcidChromatography, High Pressure LiquidCoffeaCoffeeEnzyme ActivationEscherichia coliEstersIsomerismMolecular ConformationMutagenesis, Site-DirectedPlant ProteinsProtein BiosynthesisAcyltransferasesAmino Acidscaffeoylquinic acidChlorogenic AcidCoffeeEstershydroxycinnamoyl-CoA-quinate transferasePlant ProteinsQuinic Acid

Identifiers

PMID22822210
PMCPMC3440203

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.