Evidence map›Paper›PMID 22821564›Full record

ArticleNucleic acids research2012

Structural and functional analysis of the transcriptional regulator Rv3066 of Mycobacterium tuberculosis.

Jani Reddy Bolla, Sylvia V Do, Feng Long, Lei Dai, Chih-Chia Su, Hsiang-Ting Lei, Xiao Chen, Jillian E Gerkey, Daniel C Murphy, Kanagalaghatta R Rajashankar and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
  2. Transcriptional regulation and drug resistance inFrontiers in cellular and infection microbiology · 2022
    Review
  3. Transcriptional Response ofFrontiers in microbiology · 2021
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Insights onFrontiers in microbiology · 2018
    Article
  10. Article
  11. Article
  12. Crystal structure of the Mycobacterium tuberculosis transcriptional regulator Rv0302.Protein science : a publication of the Protein Society · 2015
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Energy metabolism and drug efflux in Mycobacterium tuberculosis.Antimicrobial agents and chemotherapy · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Jani Reddy BollaDepartment of Chemistry, College of Veterinary Medicine, Iowa State University, Ames, IA 50011, USA.
Sylvia V Do
Feng Long
Lei Dai
Chih-Chia Su
Hsiang-Ting Lei
Xiao Chen
Jillian E Gerkey
Daniel C Murphy
Kanagalaghatta R Rajashankar
Qijing Zhang
Edward W Yu
Argonne National Laboratory · US

Funding

Y-FAMILY POLYMERASES AND CO-FACTORS IN TRANSLESION REPLICATIONP41RR015301 · NCRR · CORNELL UNIVERSITY ITHACA · PI EISENBERG, DAVID · 2001 to 2011
$28.2M
Mechanisms of Antibiotic Efflux in CampylobacterR01DK063008 · NIDDK · IOWA STATE UNIVERSITY · PI ZHANG, QIJING · 2003 to 2011
$2.1M
Metal ion export in bacteriaR01GM086431 · NIGMS · IOWA STATE UNIVERSITY · PI YU, EDWARD W · 2010 to 2013
$1.1M
NCRR NIH HHS P41 RR015301NCRR NIH HHS RR-15301NIDDK NIH HHS DK063008NIDDK NIH HHS R01 DK063008NIGMS NIH HHS GM086431NIGMS NIH HHS R01 GM086431
6 · The paper itself

Abstract

The Mmr multidrug efflux pump recognizes and actively extrudes a broad range of antimicrobial agents, and promotes the intrinsic resistance to these antimicrobials in Mycobacterium tuberculosis. The expression of Mmr is controlled by the TetR-like transcriptional regulator Rv3066, whose open reading frame is located downstream of the mmr operon. To understand the structural basis of Rv3066 regulation, we have determined the crystal structures of Rv3066, both in the absence and presence of bound ethidium, revealing an asymmetric homodimeric two-domain molecule with an entirely helical architecture. The structures underscore the flexibility and plasticity of the regulator essential for multidrug recognition. Comparison of the apo-Rv3066 and Rv3066-ethidium crystal structures suggests that the conformational changes leading to drug-mediated derepression is primarily due to a rigid body rotational motion within the dimer interface of the regulator. The Rv3066 regulator creates a multidrug-binding pocket, which contains five aromatic residues. The bound ethidium is found buried within the multidrug-binding site, where extensive aromatic stacking interactions seemingly govern the binding. In vitro studies reveal that the dimeric Rv3066 regulator binds to a 14-bp palindromic inverted repeat sequence in the nanomolar range. These findings provide new insight into the mechanisms of ligand binding and Rv3066 regulation.

Indexed as

Mycobacterium tuberculosisBacterial ProteinsBinding SitesChromatography, GelDNA-Binding ProteinsDNA FootprintingDrug Resistance, Multiple, BacterialElectrophoretic Mobility Shift AssayEthidiumFluorescence PolarizationInverted Repeat SequencesMembrane Transport ProteinsModels, MolecularMolecular Docking SimulationMycobacterium smegmatisPromoter Regions, GeneticBacterial ProteinsDNA-Binding ProteinsEthidiumMembrane Transport ProteinsRepressor Proteins

Identifiers

PMID22821564
PMCPMC3467072
OpenAlexW2069764897

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.