Evidence map›Paper›PMID 22820603›Full record

ArticleNature immunology2012

Recognition of CD1d-sulfatide mediated by a type II natural killer T cell antigen receptor.

Onisha Patel, Daniel G Pellicci, Stephanie Gras, Maria L Sandoval-Romero, Adam P Uldrich, Thierry Mallevaey, Andrew J Clarke, Jérôme Le Nours, Alex Theodossis, Susanna L Cardell and 3 more

Abstract read
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In one paragraph

Article in Nature immunology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 77 papers.

0numbers the graph read from it
0cells of the map it votes in
77citing papers in PubMed
7.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

77 citing papers in PubMed, 118 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Immune cells in alcohol-related liver disease.Liver research (Beijing, China) · 2022
    Review
  6. Review
  7. Review
  8. Benzofuran sulfonates and small self-lipid antigens activate type II NKT cells via CD1d.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  9. Review
  10. Article
  11. Novel Molecular Insights into Human Lipid-Mediated T Cell Immunity.International journal of molecular sciences · 2021
    Review
  12. Article
  13. Review
  14. Article
  15. MHC Restriction: Where Are We Now?Viral immunology · 2020
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Molecular recognition of microbial lipid-based antigens by T cells.Cellular and molecular life sciences : CMLS · 2018
    Review

17 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 5 countries.

Onisha Patel1] Department of Biochemistry and Molecular Biology, School of Biomedical Sciences, Monash University, Clayton, Australia.
Daniel G Pellicci
Stephanie Gras
Maria L Sandoval-Romero
Adam P Uldrich
Thierry Mallevaey
Andrew J Clarke
Jérôme Le Nours
Alex Theodossis
Susanna L Cardell
Laurent Gapin
Dale I Godfrey
Jamie Rossjohn
Monash University · AUUniversity of Melbourne · AUUniversity of Colorado Denver · USUniversity of Gothenburg · SE

Funding

iNKT Cell Recognition of Endogenous Lipid AntigensR01AI092108 · NIAID · UNIVERSITY OF COLORADO DENVER · PI GAPIN, LAURENT · 2011 to 2014
$1.5M
CD1d2-Selected iNKT CellsR21AI090450 · NIAID · UNIVERSITY OF COLORADO DENVER · PI GAPIN, LAURENT · 2010 to 2011
$381k
NIAID NIH HHS AI090450NIAID NIH HHS AI092108
6 · The paper itself

Abstract

Natural killer T cells (NKT cells) are divided into type I and type II subsets on the basis of differences in their T cell antigen receptor (TCR) repertoire and CD1d-antigen specificity. Although the mode by which type I NKT cell TCRs recognize CD1d-antigen has been established, how type II NKT cell TCRs engage CD1d-antigen is unknown. Here we provide a basis for how a type II NKT cell TCR, XV19, recognized CD1d-sulfatide. The XV19 TCR bound orthogonally above the A' pocket of CD1d, in contrast to the parallel docking of type I NKT cell TCRs over the F' pocket of CD1d. At the XV19 TCR-CD1d-sulfatide interface, the TCRα and TCRβ chains sat centrally on CD1d, where the malleable CDR3 loops dominated interactions with CD1d-sulfatide. Accordingly, we highlight the diverse mechanisms by which NKT cell TCRs can bind CD1d and account for the distinct antigen specificity of type II NKT cells.

Indexed as

AnimalsAntigens, CD1dCrystallizationKiller Cells, NaturalLymphocyte ActivationMicePolymerase Chain ReactionProtein Structure, QuaternaryReceptors, Antigen, T-Cell, alpha-betaSulfoglycosphingolipidsSurface Plasmon ResonanceT-Lymphocyte SubsetsAntigens, CD1dCd1d1 protein, mouseReceptors, Antigen, T-Cell, alpha-betaSulfoglycosphingolipids

Identifiers

PMID22820603
OpenAlexW2105575127

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.