Evidence map›Paper›PMID 22820184›Full record

ArticleBiochemical and biophysical research communications2012

Cloning and characterization of the human SH3BP2 promoter.

Chun Fan, Robert J Gaivin, Thomas A Marth, Belinda Willard, Michael A Levine, Steven A Lietman

Registry-linked trialAbstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT01916772 (Natural Hisotry of Cherubism Observational Study), which is not on this map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact, top 93% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT01916772 completednot on this mapstarted 2013, after this paper: background citation

Natural Hisotry of Cherubism Observational Study

TypeobservationalSponsorThe Cleveland ClinicRan2013 to 2016Enrolled33ConditionsCherubismArmsno interventions
3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Chun FanDepartment of Biomedical Engineering, The Cleveland Clinic, Cleveland, OH 44195, USA. chunf@ccf.org
Robert J Gaivin
Thomas A Marth
Belinda Willard
Michael A Levine
Steven A Lietman
Cleveland Clinic · USUniversity of Pennsylvania · US

Funding

CTSA INFRASTRUCTURE FOR PEDIATRIC RESEARCHUL1RR024989 · NCRR · CASE WESTERN RESERVE UNIVERSITY · PI DAVIS, PAMELA B · 2007 to 2011
$53.7M
Molecular Mechanisms in Bone ResorptionR01DE018237 · NIDCR · CLEVELAND CLINIC LERNER COM-CWRU · PI LIETMAN, STEVEN A · 2008 to 2012
$1.7M
Molecular Mechanisms of Ectopic Bone FormationK08AR047661 · NIAMS · JOHNS HOPKINS UNIVERSITY · PI LIETMAN, STEVEN A · 2002 to 2006
$616k
Molecular Mechanisms in Bone ResorptionK02DE019664 · NIDCR · CLEVELAND CLINIC LERNER COM-CWRU · PI LIETMAN, STEVEN A · 2011 to 2015
$493k
NIAMS NIH HHS K08 AR047661NIAMS NIH HHS K08-AR47661NIDCR NIH HHS K02 DE019664NIDCR NIH HHS R01 DE018237NIDCR NIH HHS R01-DE018237NIDCR NIH HHS R01DE018237-02S1
6 · The paper itself

Abstract

SH3BP2 activating mutations lead to an unique clinical condition in which patients develop symmetrical bone resorptive lesions of the jaw, a condition termed cherubism. Due to this specific temporal sequence and location of bone resorption, we investigated the transcriptional regulation of SH3BP2 expression. Analyses of 5'- and 3'-serial promoter deletions defined the core promoter/regulatory elements, including two repressor sites (from -1,200 to -1,000 and from +86 to +115, respectively) and two activator sites (a PARP1 binding site from -44 to -21 and a second activator site from +57 to +86). We identified that PARP1 binds to DNA from -44 to -21 by Streptavidin-biotin purification and confirmed this binding by electrophoretic mobility shift assay (EMSA). Mutagenesis of the PARP1 binding site on the SH3BP2 promoter showed that this binding site is essential for SH3BP2 expression. EMSA and chromatin immunoprecipitation (ChIP) assays confirmed that PARP1 was able to bind to the SH3BP2 promoter in vitro and in vivo. Indeed, knockout of Parp1 in mice BMMs reduced expression of SH3BP2. These results demonstrate that PARP1 regulates expression of SH3BP2.

Indexed as

Promoter Regions, GeneticTranscriptional ActivationAdaptor Proteins, Signal TransducingAnimalsBase SequenceBinding SitesCell LineChromatin ImmunoprecipitationCloning, MolecularElectrophoretic Mobility Shift AssayHumansMiceMolecular Sequence DataPoly (ADP-Ribose) Polymerase-1Poly(ADP-ribose) PolymerasesTranscription, GeneticAdaptor Proteins, Signal TransducingPARP1 protein, humanPoly (ADP-Ribose) Polymerase-1Poly(ADP-ribose) PolymerasesSH3BP2 protein, human

Identifiers

PMID22820184
PMCPMC3423545
OpenAlexW1988861652

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.