Evidence map›Paper›PMID 22818032›Full record

ArticleBMC systems biology2012

Multi-way metamodelling facilitates insight into the complex input-output maps of nonlinear dynamic models.

Kristin Tøndel, Ulf G Indahl, Arne B Gjuvsland, Stig W Omholt, Harald Martens

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Article in BMC systems biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

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5citing papers in PubMed
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5 citing papers in PubMed.

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5 · Who and what money

Authors and funding

5 authors.

Kristin TøndelCentre for Integrative Genetics (CIGENE), Dept, of Mathematical Sciences and Technology, Norwegian University of Life Sciences, Ås, Norway. kristin.tondel@umb.no
Ulf G Indahl
Arne B Gjuvsland
Stig W Omholt
Harald Martens

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundStatistical approaches to describing the behaviour, including the complex relationships between input parameters and model outputs, of nonlinear dynamic models (referred to as metamodelling) are gaining more and more acceptance as a means for sensitivity analysis and to reduce computational demand. Understanding such input-output maps is necessary for efficient model construction and validation. Multi-way metamodelling provides the opportunity to retain the block-wise structure of the temporal data typically generated by dynamic models throughout the analysis. Furthermore, a cluster-based approach to regional metamodelling allows description of highly nonlinear input-output relationships, revealing additional patterns of covariation.

resultsBy presenting the N-way Hierarchical Cluster-based Partial Least Squares Regression (N-way HC-PLSR) method, we here combine multi-way analysis with regional cluster-based metamodelling, together making a powerful methodology for extensive exploration of the input-output maps of complex dynamic models. We illustrate the potential of the N-way HC-PLSR by applying it both to predict model outputs as functions of the input parameters, and in the inverse direction (predicting input parameters from the model outputs), to analyse the behaviour of a dynamic model of the mammalian circadian clock. Our results display a more complete cartography of how variation in input parameters is reflected in the temporal behaviour of multiple model outputs than has been previously reported.

conclusionsOur results indicated that the N-way HC-PLSR metamodelling provides a gain in insight into which parameters that are related to a specific model output behaviour, as well as variations in the model sensitivity to certain input parameters across the model output space. Moreover, the N-way approach allows a more transparent and detailed exploration of the temporal dimension of complex dynamic models, compared to alternative 2-way methods.

Indexed as

Nonlinear DynamicsAnimalsCircadian ClocksCluster AnalysisComputational BiologyFeedback, PhysiologicalLeast-Squares AnalysisModels, BiologicalMultivariate AnalysisReproducibility of Results

Identifiers

PMID22818032
PMCPMC3483253

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.