Evidence map›Paper›PMID 22815997›Full record

ArticlePloS one2012

Autophagy in idiopathic pulmonary fibrosis.

Avignat S Patel, Ling Lin, Alexander Geyer, Jeffrey A Haspel, Chang Hyeok An, Jiaofei Cao, Ivan O Rosas, Danielle Morse

Abstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 215 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
215citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

215 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Hallmarks of the ageing lung: 10 years later.The European respiratory journal · 2026
    Review
  5. Review
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. When Autophagy Fails:American journal of respiratory cell and molecular biology · 2025
    Article
  14. Mechanisms and markers of lung ageing in health and disease.European respiratory review : an official journal of the European Respiratory Society · 2025
    Review
  15. Article
  16. Review
  17. Review
  18. Mechanisms and Therapeutic Potential of Myofibroblast Transformation in Pulmonary Fibrosis.Journal of respiratory biology and translational medicine · 2025
    Article
  19. Review
  20. Review

155 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Avignat S PatelDivision of Pulmonary and Critical Care Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, Massachusetts, United States of America.
Ling Lin
Alexander Geyer
Jeffrey A Haspel
Chang Hyeok An
Jiaofei Cao
Ivan O Rosas
Danielle Morse

Funding

RESPIRATORY RESEARCHT32HL007633 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI George R Washko · 1985 to 2026
$14.9M
Inhibitor of differentiation-1 mediates antifibrotic effects of carbon monoxideR01HL087122 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MORSE, ERIN DANIELLE · 2008 to 2012
$1.9M
Syndecan-2 and Clinical Progression of Idiopathic Pulmonary FibrosisK23HL087030 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI ROSAS, IVAN O. · 2008 to 2012
$759k
NHLBI NIH HHS 5T32HL007633-24NHLBI NIH HHS 5T32HL007633-25NHLBI NIH HHS K23 HL087030NHLBI NIH HHS R01 HL087122NHLBI NIH HHS R01HL087122-01NHLBI NIH HHS T32 HL007633
6 · The paper itself

Abstract

backgroundAutophagy is a basic cellular homeostatic process important to cell fate decisions under conditions of stress. Dysregulation of autophagy impacts numerous human diseases including cancer and chronic obstructive lung disease. This study investigates the role of autophagy in idiopathic pulmonary fibrosis.

methodsHuman lung tissues from patients with IPF were analyzed for autophagy markers and modulating proteins using western blotting, confocal microscopy and transmission electron microscopy. To study the effects of TGF-β(1) on autophagy, human lung fibroblasts were monitored by fluorescence microscopy and western blotting. In vivo experiments were done using the bleomycin-induced fibrosis mouse model.

resultsLung tissues from IPF patients demonstrate evidence of decreased autophagic activity as assessed by LC3, p62 protein expression and immunofluorescence, and numbers of autophagosomes. TGF-β(1) inhibits autophagy in fibroblasts in vitro at least in part via activation of mTORC1; expression of TIGAR is also increased in response to TGF-β(1). In the bleomycin model of pulmonary fibrosis, rapamycin treatment is antifibrotic, and rapamycin also decreases expression of á-smooth muscle actin and fibronectin by fibroblasts in vitro. Inhibition of key regulators of autophagy, LC3 and beclin-1, leads to the opposite effect on fibroblast expression of á-smooth muscle actin and fibronectin.

conclusionAutophagy is not induced in pulmonary fibrosis despite activation of pathways known to promote autophagy. Impairment of autophagy by TGF-β(1) may represent a mechanism for the promotion of fibrogenesis in IPF.

Indexed as

AutophagyAdaptor Proteins, Signal TransducingAnimalsApoptosis Regulatory ProteinsBeclin-1Cell LineageFibroblastsFibronectinsGene Expression RegulationHomeostasisHumansIdiopathic Pulmonary FibrosisIntracellular Signaling Peptides and ProteinsLungMechanistic Target of Rapamycin Complex 1Membrane ProteinsAdaptor Proteins, Signal TransducingApoptosis Regulatory ProteinsBeclin-1BECN1 protein, humanFibronectinsIntracellular Signaling Peptides and ProteinsMAP1LC3A protein, humanMechanistic Target of Rapamycin Complex 1Membrane ProteinsMicrotubule-Associated ProteinsMultiprotein ComplexesPhosphoric Monoester HydrolasesSequestosome-1 ProteinSQSTM1 protein, humanTIGAR protein, humanTOR Serine-Threonine KinasesTransforming Growth Factor beta

Identifiers

PMID22815997
PMCPMC3399849

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.